General information for g10800.t35
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Annexin B9.
Parent gene
- The parent gene g10800 is located on chr_1: 12053250..12057223 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10800 | g10800.t35 | TTS | g10800.t35 | 12050020 | 12050020 |
| chr_1 | g10800 | g10800.t35 | isoform | g10800.t35 | 12050198 | 12057179 |
| chr_1 | g10800 | g10800.t35 | exon | g10800.t35.exon1 | 12050198 | 12050251 |
| chr_1 | g10800 | g10800.t35 | cds | g10800.t35.CDS1 | 12050198 | 12050251 |
| chr_1 | g10800 | g10800.t35 | exon | g10800.t35.exon2 | 12052686 | 12052867 |
| chr_1 | g10800 | g10800.t35 | cds | g10800.t35.CDS2 | 12052686 | 12052867 |
| chr_1 | g10800 | g10800.t35 | exon | g10800.t35.exon3 | 12052960 | 12053108 |
| chr_1 | g10800 | g10800.t35 | cds | g10800.t35.CDS3 | 12052960 | 12053108 |
| chr_1 | g10800 | g10800.t35 | exon | g10800.t35.exon4 | 12053171 | 12053303 |
| chr_1 | g10800 | g10800.t35 | cds | g10800.t35.CDS4 | 12053171 | 12053303 |
| chr_1 | g10800 | g10800.t35 | exon | g10800.t35.exon5 | 12053380 | 12053508 |
| chr_1 | g10800 | g10800.t35 | cds | g10800.t35.CDS5 | 12053380 | 12053508 |
| chr_1 | g10800 | g10800.t35 | exon | g10800.t35.exon6 | 12053662 | 12053869 |
| chr_1 | g10800 | g10800.t35 | cds | g10800.t35.CDS6 | 12053662 | 12053869 |
| chr_1 | g10800 | g10800.t35 | exon | g10800.t35.exon7 | 12055388 | 12055446 |
| chr_1 | g10800 | g10800.t35 | cds | g10800.t35.CDS7 | 12055388 | 12055417 |
| chr_1 | g10800 | g10800.t35 | exon | g10800.t35.exon8 | 12057132 | 12057179 |
| chr_1 | g10800 | g10800.t35 | TSS | g10800.t35 | 12057215 | 12057215 |
Sequences
>g10800.t35 Gene=g10800 Length=962
ACGTAAGTGATCACTTTCAAGTGTAATAAAAGTTAAATTTATCTTAAAAGTCGTATTAAT
TGTAAAGAGCAGCGAAAATGAGTTCAGCAGCCTACTATCCATTCCAATGCAAACCAACCG
TTTACCCTGCCGATCCTTTTGACCCAAATGAAGATGCAGGTATCTTGAGAAAGGCAATGA
AAGGATTTGGAACTGATGAAAAGGCAATTATTGAAGTGCTTGCTCGTCGTGGAATTGTTC
AACGTCTTGAGATTGCTTCGGCATATAAGACCAACTTTGGCAAGGATTTGATTAATGATT
TGAAAAGTGAACTTGGAACTGACGAAGACGCTATCATCGAAATTCTCTGCACACTCTCCA
ACTATGGCATTCGTACAATTGCAGAATTCTACGAACAACTGTATGGAAATTCACTCGAAA
GCGACTTGAAGGGAGACACCTCAGGATTCTTTAAGCGTTTATGCGTATCATTAGTGCAAG
GCAATCGCGATGAAAACAATGGTGTTGATCAAGGTTCTGCTCTTGCTGATGCTACTGCAC
TTTATGAAGCCGGTGAAGGACAATGGGGCACTGATGAGTCAGTTTTCAATCAAATTCTTG
TAACCAGATCATACCAACAATTGAGACAAGTCTTTTTGGAATATGAGGCTATGAGCGGCC
ACGACATTGAAAAAGCTATCAAGCGTGAATTCTCAGGAAACGCTGAAAAAGGATTCCTCG
CAATCGCCAAGGTTGTCAAATCAAAGGTTGATTTCTTTGCTGAAAAACTCTACGAGAGCA
TGAAGGGCTTAGGTACGAATGACAAGACATTGATTCGTATCATTGTTTCACGCTCAGAAA
TTGATTTGGGTGACATCAAAGAAGCATTTGAAGCCAAGTATGGAAAAAGCCTCGAGAGCT
GGGTTAAGGATGAACTATCGAGTGATTATGAGCGAGTTATGGTTTGCCTTCTTGGATCTT
AA
>g10800.t35 Gene=g10800 Length=294
MSSAAYYPFQCKPTVYPADPFDPNEDAGILRKAMKGFGTDEKAIIEVLARRGIVQRLEIA
SAYKTNFGKDLINDLKSELGTDEDAIIEILCTLSNYGIRTIAEFYEQLYGNSLESDLKGD
TSGFFKRLCVSLVQGNRDENNGVDQGSALADATALYEAGEGQWGTDESVFNQILVTRSYQ
QLRQVFLEYEAMSGHDIEKAIKREFSGNAEKGFLAIAKVVKSKVDFFAEKLYESMKGLGT
NDKTLIRIIVSRSEIDLGDIKEAFEAKYGKSLESWVKDELSSDYERVMVCLLGS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g10800.t35 | Gene3D | G3DSA:1.10.220.10 | - | 20 | 78 | 3.0E-21 |
| 12 | g10800.t35 | Gene3D | G3DSA:1.10.220.10 | - | 79 | 135 | 6.4E-20 |
| 10 | g10800.t35 | Gene3D | G3DSA:1.10.220.10 | - | 136 | 222 | 2.4E-30 |
| 11 | g10800.t35 | Gene3D | G3DSA:1.10.220.10 | - | 224 | 294 | 4.3E-26 |
| 5 | g10800.t35 | PANTHER | PTHR10502 | ANNEXIN | 7 | 292 | 2.7E-121 |
| 6 | g10800.t35 | PANTHER | PTHR10502:SF212 | ANNEXIN B9 | 7 | 292 | 2.7E-121 |
| 8 | g10800.t35 | PRINTS | PR00196 | Annexin family signature | 161 | 183 | 3.9E-8 |
| 7 | g10800.t35 | PRINTS | PR00196 | Annexin family signature | 231 | 252 | 3.9E-8 |
| 1 | g10800.t35 | Pfam | PF00191 | Annexin | 26 | 79 | 1.1E-17 |
| 2 | g10800.t35 | Pfam | PF00191 | Annexin | 78 | 132 | 3.7E-18 |
| 3 | g10800.t35 | Pfam | PF00191 | Annexin | 151 | 216 | 1.4E-23 |
| 4 | g10800.t35 | Pfam | PF00191 | Annexin | 226 | 291 | 4.3E-23 |
| 14 | g10800.t35 | ProSitePatterns | PS00223 | Annexin repeat signature. | 239 | 291 | - |
| 20 | g10800.t35 | ProSiteProfiles | PS51897 | Annexin repeat profile. | 21 | 95 | 23.1 |
| 19 | g10800.t35 | ProSiteProfiles | PS51897 | Annexin repeat profile. | 146 | 218 | 27.356 |
| 21 | g10800.t35 | ProSiteProfiles | PS51897 | Annexin repeat profile. | 222 | 293 | 27.946 |
| 16 | g10800.t35 | SMART | SM00335 | annex3 | 38 | 79 | 1.3E-9 |
| 15 | g10800.t35 | SMART | SM00335 | annex3 | 80 | 132 | 3.3E-21 |
| 17 | g10800.t35 | SMART | SM00335 | annex3 | 164 | 216 | 5.4E-20 |
| 18 | g10800.t35 | SMART | SM00335 | annex3 | 239 | 291 | 6.2E-23 |
| 9 | g10800.t35 | SUPERFAMILY | SSF47874 | Annexin | 11 | 293 | 1.01E-105 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005544 | calcium-dependent phospholipid binding | MF |
| GO:0005509 | calcium ion binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed