Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B9.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10800 g10800.t37 TTS g10800.t37 12050020 12050020
chr_1 g10800 g10800.t37 isoform g10800.t37 12050198 12057179
chr_1 g10800 g10800.t37 exon g10800.t37.exon1 12050198 12050251
chr_1 g10800 g10800.t37 cds g10800.t37.CDS1 12050198 12050251
chr_1 g10800 g10800.t37 exon g10800.t37.exon2 12052686 12052801
chr_1 g10800 g10800.t37 cds g10800.t37.CDS2 12052686 12052801
chr_1 g10800 g10800.t37 exon g10800.t37.exon3 12052960 12053108
chr_1 g10800 g10800.t37 cds g10800.t37.CDS3 12052960 12053108
chr_1 g10800 g10800.t37 exon g10800.t37.exon4 12053171 12053303
chr_1 g10800 g10800.t37 cds g10800.t37.CDS4 12053171 12053303
chr_1 g10800 g10800.t37 exon g10800.t37.exon5 12053380 12053508
chr_1 g10800 g10800.t37 cds g10800.t37.CDS5 12053380 12053508
chr_1 g10800 g10800.t37 exon g10800.t37.exon6 12053572 12053869
chr_1 g10800 g10800.t37 cds g10800.t37.CDS6 12053572 12053869
chr_1 g10800 g10800.t37 exon g10800.t37.exon7 12055388 12055446
chr_1 g10800 g10800.t37 cds g10800.t37.CDS7 12055388 12055417
chr_1 g10800 g10800.t37 exon g10800.t37.exon8 12057132 12057179
chr_1 g10800 g10800.t37 TSS g10800.t37 12057215 12057215

Sequences

>g10800.t37 Gene=g10800 Length=986
ACGTAAGTGATCACTTTCAAGTGTAATAAAAGTTAAATTTATCTTAAAAGTCGTATTAAT
TGTAAAGAGCAGCGAAAATGAGTTCAGCAGCCTACTATCCATTCCAATGCAAACCAACCG
TTTACCCTGCCGATCCTTTTGACCCAAATGAAGATGCAGGTATCTTGAGAAAGGCAATGA
AAGGATTTGGAACTGATGAAAAGGCAATTATTGAAGTGCTTGCTCGTCGTGGAATTGTTC
AACGTCTTGAGATTGCTTCGGCATATAAGACCAACTTTGGCAAGGATTTGATTAATGATT
TGAAAAGTGAACTTGGTGGCAAGTTTGAAGATGTCATTCTTGCTTTGATGACTCCTTTGC
CGCAATTCTATGCAAAGGAATTGCATGATGCAATTTCCGGCATTGGAACTGACGAAGACG
CTATCATCGAAATTCTCTGCACACTCTCCAACTATGGCATTCGTACAATTGCAGAATTCT
ACGAACAACTGTATGGAAATTCACTCGAAAGCGACTTGAAGGGAGACACCTCAGGATTCT
TTAAGCGTTTATGCGTATCATTAGTGCAAGGCAATCGCGATGAAAACAATGGTGTTGATC
AAGGTTCTGCTCTTGCTGATGCTACTGCACTTTATGAAGCCGGTGAAGGACAATGGGGCA
CTGATGAGTCAGTTTTCAATCAAATTCTTGTAACCAGATCATACCAACAATTGAGACAAG
TCTTTTTGGAATATGAGGCTATGAGCGGCCACGACATTGAAAAAGCTATCAAGCGTGAAT
TCTCAGGAAACGCTGAAAAAGGATTCCTCGCAATCGGTACGAATGACAAGACATTGATTC
GTATCATTGTTTCACGCTCAGAAATTGATTTGGGTGACATCAAAGAAGCATTTGAAGCCA
AGTATGGAAAAAGCCTCGAGAGCTGGGTTAAGGATGAACTATCGAGTGATTATGAGCGAG
TTATGGTTTGCCTTCTTGGATCTTAA

>g10800.t37 Gene=g10800 Length=302
MSSAAYYPFQCKPTVYPADPFDPNEDAGILRKAMKGFGTDEKAIIEVLARRGIVQRLEIA
SAYKTNFGKDLINDLKSELGGKFEDVILALMTPLPQFYAKELHDAISGIGTDEDAIIEIL
CTLSNYGIRTIAEFYEQLYGNSLESDLKGDTSGFFKRLCVSLVQGNRDENNGVDQGSALA
DATALYEAGEGQWGTDESVFNQILVTRSYQQLRQVFLEYEAMSGHDIEKAIKREFSGNAE
KGFLAIGTNDKTLIRIIVSRSEIDLGDIKEAFEAKYGKSLESWVKDELSSDYERVMVCLL
GS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g10800.t37 Gene3D G3DSA:1.10.220.10 - 20 92 1.2E-27
14 g10800.t37 Gene3D G3DSA:1.10.220.10 - 94 166 6.1E-26
16 g10800.t37 Gene3D G3DSA:1.10.220.10 - 167 245 4.5E-29
17 g10800.t37 Gene3D G3DSA:1.10.220.10 - 246 302 6.0E-19
5 g10800.t37 PANTHER PTHR10502 ANNEXIN 7 246 4.5E-125
7 g10800.t37 PANTHER PTHR10502:SF212 ANNEXIN B9 7 246 4.5E-125
6 g10800.t37 PANTHER PTHR10502 ANNEXIN 246 300 4.5E-125
8 g10800.t37 PANTHER PTHR10502:SF212 ANNEXIN B9 246 300 4.5E-125
12 g10800.t37 PRINTS PR00196 Annexin family signature 35 57 1.1E-37
9 g10800.t37 PRINTS PR00196 Annexin family signature 75 91 1.1E-37
11 g10800.t37 PRINTS PR00196 Annexin family signature 102 123 1.1E-37
10 g10800.t37 PRINTS PR00196 Annexin family signature 185 211 1.1E-37
4 g10800.t37 Pfam PF00191 Annexin 26 90 2.0E-22
1 g10800.t37 Pfam PF00191 Annexin 98 162 2.2E-22
2 g10800.t37 Pfam PF00191 Annexin 181 246 1.5E-23
3 g10800.t37 Pfam PF00191 Annexin 246 299 2.4E-17
18 g10800.t37 ProSitePatterns PS00223 Annexin repeat signature. 38 90 -
19 g10800.t37 ProSitePatterns PS00223 Annexin repeat signature. 247 299 -
27 g10800.t37 ProSiteProfiles PS51897 Annexin repeat profile. 21 92 26.995
26 g10800.t37 ProSiteProfiles PS51897 Annexin repeat profile. 93 164 27.041
25 g10800.t37 ProSiteProfiles PS51897 Annexin repeat profile. 176 248 26.604
24 g10800.t37 ProSiteProfiles PS51897 Annexin repeat profile. 249 301 12.942
21 g10800.t37 SMART SM00335 annex3 38 90 4.1E-22
20 g10800.t37 SMART SM00335 annex3 110 162 3.3E-21
23 g10800.t37 SMART SM00335 annex3 194 246 5.4E-20
22 g10800.t37 SMART SM00335 annex3 247 299 6.2E-23
13 g10800.t37 SUPERFAMILY SSF47874 Annexin 6 301 9.29E-110

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values