General information for g10800.t39
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Annexin B9.
Parent gene
- The parent gene g10800 is located on chr_1: 12053250..12057223 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10800 | g10800.t39 | TTS | g10800.t39 | 12050020 | 12050020 |
| chr_1 | g10800 | g10800.t39 | isoform | g10800.t39 | 12050198 | 12057179 |
| chr_1 | g10800 | g10800.t39 | exon | g10800.t39.exon1 | 12050198 | 12050251 |
| chr_1 | g10800 | g10800.t39 | cds | g10800.t39.CDS1 | 12050198 | 12050251 |
| chr_1 | g10800 | g10800.t39 | exon | g10800.t39.exon2 | 12052686 | 12052867 |
| chr_1 | g10800 | g10800.t39 | cds | g10800.t39.CDS2 | 12052686 | 12052867 |
| chr_1 | g10800 | g10800.t39 | exon | g10800.t39.exon3 | 12052960 | 12053108 |
| chr_1 | g10800 | g10800.t39 | cds | g10800.t39.CDS3 | 12052960 | 12053108 |
| chr_1 | g10800 | g10800.t39 | exon | g10800.t39.exon4 | 12053171 | 12053303 |
| chr_1 | g10800 | g10800.t39 | cds | g10800.t39.CDS4 | 12053171 | 12053303 |
| chr_1 | g10800 | g10800.t39 | exon | g10800.t39.exon5 | 12053380 | 12053508 |
| chr_1 | g10800 | g10800.t39 | cds | g10800.t39.CDS5 | 12053380 | 12053508 |
| chr_1 | g10800 | g10800.t39 | exon | g10800.t39.exon6 | 12053568 | 12053869 |
| chr_1 | g10800 | g10800.t39 | cds | g10800.t39.CDS6 | 12053568 | 12053592 |
| chr_1 | g10800 | g10800.t39 | exon | g10800.t39.exon7 | 12055388 | 12055446 |
| chr_1 | g10800 | g10800.t39 | exon | g10800.t39.exon8 | 12057132 | 12057179 |
| chr_1 | g10800 | g10800.t39 | TSS | g10800.t39 | 12057215 | 12057215 |
Sequences
>g10800.t39 Gene=g10800 Length=1056
ACGTAAGTGATCACTTTCAAGTGTAATAAAAGTTAAATTTATCTTAAAAGTCGTATTAAT
TGTAAAGAGCAGCGAAAATGAGTTCAGCAGCCTACTATCCATTCCAATGCAAACCAACCG
TTTACCCTGCCGATCCTTTTGACCCAAATGAAGATGCAGGTATCTTGAGAAAGGCAATGA
AAGGATTTGGAACTGATGAAAAGGCAATTATTGAAGTGCTTGCTCGTCGTGGAATTGTTC
AACGTCTTGAGATTGCTTCGGCATATAAGACCAACTTTGGCAAGGATTTGATTAATGATT
TGAAAAGTGAACTTGGTGGCAAGTTTGAAGATGTCATTCTTGCTTTGATGACTCCTTTGC
CGCAATTCTATGCAAAGGAATTGCATGATGCAATTTCCGGCATTGGTAAGAACTGACGAA
GACGCTATCATCGAAATTCTCTGCACACTCTCCAACTATGGCATTCGTACAATTGCAGAA
TTCTACGAACAACTGTATGGAAATTCACTCGAAAGCGACTTGAAGGGAGACACCTCAGGA
TTCTTTAAGCGTTTATGCGTATCATTAGTGCAAGGCAATCGCGATGAAAACAATGGTGTT
GATCAAGGTTCTGCTCTTGCTGATGCTACTGCACTTTATGAAGCCGGTGAAGGACAATGG
GGCACTGATGAGTCAGTTTTCAATCAAATTCTTGTAACCAGATCATACCAACAATTGAGA
CAAGTCTTTTTGGAATATGAGGCTATGAGCGGCCACGACATTGAAAAAGCTATCAAGCGT
GAATTCTCAGGAAACGCTGAAAAAGGATTCCTCGCAATCGCCAAGGTTGTCAAATCAAAG
GTTGATTTCTTTGCTGAAAAACTCTACGAGAGCATGAAGGGCTTAGGTACGAATGACAAG
ACATTGATTCGTATCATTGTTTCACGCTCAGAAATTGATTTGGGTGACATCAAAGAAGCA
TTTGAAGCCAAGTATGGAAAAAGCCTCGAGAGCTGGGTTAAGGATGAACTATCGAGTGAT
TATGAGCGAGTTATGGTTTGCCTTCTTGGATCTTAA
>g10800.t39 Gene=g10800 Length=223
MMQFPALVRTDEDAIIEILCTLSNYGIRTIAEFYEQLYGNSLESDLKGDTSGFFKRLCVS
LVQGNRDENNGVDQGSALADATALYEAGEGQWGTDESVFNQILVTRSYQQLRQVFLEYEA
MSGHDIEKAIKREFSGNAEKGFLAIAKVVKSKVDFFAEKLYESMKGLGTNDKTLIRIIVS
RSEIDLGDIKEAFEAKYGKSLESWVKDELSSDYERVMVCLLGS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g10800.t39 | Gene3D | G3DSA:1.10.220.10 | - | 6 | 64 | 7.8E-19 |
| 13 | g10800.t39 | Gene3D | G3DSA:1.10.220.10 | - | 65 | 151 | 1.3E-30 |
| 11 | g10800.t39 | Gene3D | G3DSA:1.10.220.10 | - | 153 | 223 | 2.6E-26 |
| 4 | g10800.t39 | PANTHER | PTHR10502 | ANNEXIN | 10 | 221 | 1.1E-91 |
| 5 | g10800.t39 | PANTHER | PTHR10502:SF212 | ANNEXIN B9 | 10 | 221 | 1.1E-91 |
| 8 | g10800.t39 | PRINTS | PR00196 | Annexin family signature | 1 | 21 | 8.8E-32 |
| 7 | g10800.t39 | PRINTS | PR00196 | Annexin family signature | 84 | 110 | 8.8E-32 |
| 6 | g10800.t39 | PRINTS | PR00196 | Annexin family signature | 164 | 184 | 8.8E-32 |
| 9 | g10800.t39 | PRINTS | PR00196 | Annexin family signature | 192 | 207 | 8.8E-32 |
| 2 | g10800.t39 | Pfam | PF00191 | Annexin | 10 | 61 | 6.3E-17 |
| 3 | g10800.t39 | Pfam | PF00191 | Annexin | 80 | 145 | 8.5E-24 |
| 1 | g10800.t39 | Pfam | PF00191 | Annexin | 155 | 220 | 2.6E-23 |
| 14 | g10800.t39 | ProSitePatterns | PS00223 | Annexin repeat signature. | 168 | 220 | - |
| 19 | g10800.t39 | ProSiteProfiles | PS51897 | Annexin repeat profile. | 1 | 63 | 20.041 |
| 18 | g10800.t39 | ProSiteProfiles | PS51897 | Annexin repeat profile. | 75 | 147 | 27.356 |
| 20 | g10800.t39 | ProSiteProfiles | PS51897 | Annexin repeat profile. | 151 | 222 | 27.946 |
| 16 | g10800.t39 | SMART | SM00335 | annex3 | 9 | 61 | 2.1E-19 |
| 15 | g10800.t39 | SMART | SM00335 | annex3 | 93 | 145 | 5.4E-20 |
| 17 | g10800.t39 | SMART | SM00335 | annex3 | 168 | 220 | 6.2E-23 |
| 10 | g10800.t39 | SUPERFAMILY | SSF47874 | Annexin | 9 | 222 | 3.93E-80 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005544 | calcium-dependent phospholipid binding | MF |
| GO:0005509 | calcium ion binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed