General information for g10800.t42
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Annexin B9.
Parent gene
- The parent gene g10800 is located on chr_1: 12053250..12057223 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10800 | g10800.t42 | TTS | g10800.t42 | 12050020 | 12050020 |
| chr_1 | g10800 | g10800.t42 | isoform | g10800.t42 | 12050198 | 12057179 |
| chr_1 | g10800 | g10800.t42 | exon | g10800.t42.exon1 | 12050198 | 12050251 |
| chr_1 | g10800 | g10800.t42 | cds | g10800.t42.CDS1 | 12050198 | 12050251 |
| chr_1 | g10800 | g10800.t42 | exon | g10800.t42.exon2 | 12052686 | 12052867 |
| chr_1 | g10800 | g10800.t42 | cds | g10800.t42.CDS2 | 12052686 | 12052867 |
| chr_1 | g10800 | g10800.t42 | exon | g10800.t42.exon3 | 12052960 | 12053108 |
| chr_1 | g10800 | g10800.t42 | cds | g10800.t42.CDS3 | 12052960 | 12053108 |
| chr_1 | g10800 | g10800.t42 | exon | g10800.t42.exon4 | 12053171 | 12053303 |
| chr_1 | g10800 | g10800.t42 | cds | g10800.t42.CDS4 | 12053171 | 12053303 |
| chr_1 | g10800 | g10800.t42 | exon | g10800.t42.exon5 | 12053380 | 12053508 |
| chr_1 | g10800 | g10800.t42 | cds | g10800.t42.CDS5 | 12053380 | 12053508 |
| chr_1 | g10800 | g10800.t42 | exon | g10800.t42.exon6 | 12053572 | 12053773 |
| chr_1 | g10800 | g10800.t42 | cds | g10800.t42.CDS6 | 12053572 | 12053629 |
| chr_1 | g10800 | g10800.t42 | exon | g10800.t42.exon7 | 12053854 | 12053869 |
| chr_1 | g10800 | g10800.t42 | exon | g10800.t42.exon8 | 12055388 | 12055446 |
| chr_1 | g10800 | g10800.t42 | exon | g10800.t42.exon9 | 12057132 | 12057179 |
| chr_1 | g10800 | g10800.t42 | TSS | g10800.t42 | 12057215 | 12057215 |
Sequences
>g10800.t42 Gene=g10800 Length=972
ACGTAAGTGATCACTTTCAAGTGTAATAAAAGTTAAATTTATCTTAAAAGTCGTATTAAT
TGTAAAGAGCAGCGAAAATGAGTTCAGCAGCCTACTATCCATTCCAATGCAAACCAACCG
TTTGCAATTATTGAAGTGCTTGCTCGTCGTGGAATTGTTCAACGTCTTGAGATTGCTTCG
GCATATAAGACCAACTTTGGCAAGGATTTGATTAATGATTTGAAAAGTGAACTTGGTGGC
AAGTTTGAAGATGTCATTCTTGCTTTGATGACTCCTTTGCCGCAATTCTATGCAAAGGAA
TTGCATGATGCAATTTCCGGCATTGGAACTGACGAAGACGCTATCATCGAAATTCTCTGC
ACACTCTCCAACTATGGCATTCGTACAATTGCAGAATTCTACGAACAACTGTATGGAAAT
TCACTCGAAAGCGACTTGAAGGGAGACACCTCAGGATTCTTTAAGCGTTTATGCGTATCA
TTAGTGCAAGGCAATCGCGATGAAAACAATGGTGTTGATCAAGGTTCTGCTCTTGCTGAT
GCTACTGCACTTTATGAAGCCGGTGAAGGACAATGGGGCACTGATGAGTCAGTTTTCAAT
CAAATTCTTGTAACCAGATCATACCAACAATTGAGACAAGTCTTTTTGGAATATGAGGCT
ATGAGCGGCCACGACATTGAAAAAGCTATCAAGCGTGAATTCTCAGGAAACGCTGAAAAA
GGATTCCTCGCAATCGCCAAGGTTGTCAAATCAAAGGTTGATTTCTTTGCTGAAAAACTC
TACGAGAGCATGAAGGGCTTAGGTACGAATGACAAGACATTGATTCGTATCATTGTTTCA
CGCTCAGAAATTGATTTGGGTGACATCAAAGAAGCATTTGAAGCCAAGTATGGAAAAAGC
CTCGAGAGCTGGGTTAAGGATGAACTATCGAGTGATTATGAGCGAGTTATGGTTTGCCTT
CTTGGATCTTAA
>g10800.t42 Gene=g10800 Length=234
MTPLPQFYAKELHDAISGIGTDEDAIIEILCTLSNYGIRTIAEFYEQLYGNSLESDLKGD
TSGFFKRLCVSLVQGNRDENNGVDQGSALADATALYEAGEGQWGTDESVFNQILVTRSYQ
QLRQVFLEYEAMSGHDIEKAIKREFSGNAEKGFLAIAKVVKSKVDFFAEKLYESMKGLGT
NDKTLIRIIVSRSEIDLGDIKEAFEAKYGKSLESWVKDELSSDYERVMVCLLGS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g10800.t42 | Gene3D | G3DSA:1.10.220.10 | - | 4 | 75 | 3.8E-26 |
| 11 | g10800.t42 | Gene3D | G3DSA:1.10.220.10 | - | 76 | 162 | 1.5E-30 |
| 13 | g10800.t42 | Gene3D | G3DSA:1.10.220.10 | - | 164 | 234 | 2.8E-26 |
| 4 | g10800.t42 | PANTHER | PTHR10502 | ANNEXIN | 4 | 232 | 3.8E-100 |
| 5 | g10800.t42 | PANTHER | PTHR10502:SF212 | ANNEXIN B9 | 4 | 232 | 3.8E-100 |
| 6 | g10800.t42 | PRINTS | PR00196 | Annexin family signature | 12 | 33 | 1.3E-37 |
| 7 | g10800.t42 | PRINTS | PR00196 | Annexin family signature | 95 | 121 | 1.3E-37 |
| 9 | g10800.t42 | PRINTS | PR00196 | Annexin family signature | 175 | 195 | 1.3E-37 |
| 8 | g10800.t42 | PRINTS | PR00196 | Annexin family signature | 203 | 218 | 1.3E-37 |
| 2 | g10800.t42 | Pfam | PF00191 | Annexin | 8 | 72 | 1.4E-22 |
| 3 | g10800.t42 | Pfam | PF00191 | Annexin | 91 | 156 | 9.3E-24 |
| 1 | g10800.t42 | Pfam | PF00191 | Annexin | 166 | 231 | 2.8E-23 |
| 14 | g10800.t42 | ProSitePatterns | PS00223 | Annexin repeat signature. | 179 | 231 | - |
| 20 | g10800.t42 | ProSiteProfiles | PS51897 | Annexin repeat profile. | 3 | 74 | 27.041 |
| 18 | g10800.t42 | ProSiteProfiles | PS51897 | Annexin repeat profile. | 86 | 158 | 27.356 |
| 19 | g10800.t42 | ProSiteProfiles | PS51897 | Annexin repeat profile. | 162 | 233 | 27.946 |
| 17 | g10800.t42 | SMART | SM00335 | annex3 | 20 | 72 | 3.3E-21 |
| 16 | g10800.t42 | SMART | SM00335 | annex3 | 104 | 156 | 5.4E-20 |
| 15 | g10800.t42 | SMART | SM00335 | annex3 | 179 | 231 | 6.2E-23 |
| 10 | g10800.t42 | SUPERFAMILY | SSF47874 | Annexin | 1 | 233 | 1.44E-86 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005544 | calcium-dependent phospholipid binding | MF |
| GO:0005509 | calcium ion binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed