Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B9.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10800 g10800.t43 TTS g10800.t43 12050020 12050020
chr_1 g10800 g10800.t43 isoform g10800.t43 12050198 12057179
chr_1 g10800 g10800.t43 exon g10800.t43.exon1 12050198 12050251
chr_1 g10800 g10800.t43 exon g10800.t43.exon2 12052686 12052867
chr_1 g10800 g10800.t43 exon g10800.t43.exon3 12052960 12053108
chr_1 g10800 g10800.t43 exon g10800.t43.exon4 12053171 12053303
chr_1 g10800 g10800.t43 cds g10800.t43.CDS1 12053294 12053303
chr_1 g10800 g10800.t43 exon g10800.t43.exon5 12053376 12053508
chr_1 g10800 g10800.t43 cds g10800.t43.CDS2 12053376 12053508
chr_1 g10800 g10800.t43 exon g10800.t43.exon6 12053572 12053869
chr_1 g10800 g10800.t43 cds g10800.t43.CDS3 12053572 12053800
chr_1 g10800 g10800.t43 exon g10800.t43.exon7 12057095 12057179
chr_1 g10800 g10800.t43 TSS g10800.t43 12057215 12057215

Sequences

>g10800.t43 Gene=g10800 Length=1034
ACGTAAGTGATCACTTTCAAGTGTAATAAAAGTTAAATTTATCTTAAAGTAAGTATATAA
AAGTGACATTTCATTGTTGTATTTATGCAAACCAACCGTTTACCCTGCCGATCCTTTTGA
CCCAAATGAAGATGCAGGTATCTTGAGAAAGGCAATGAAAGGATTTGGAACTGATGAAAA
GGCAATTATTGAAGTGCTTGCTCGTCGTGGAATTGTTCAACGTCTTGAGATTGCTTCGGC
ATATAAGACCAACTTTGGCAAGGATTTGATTAATGATTTGAAAAGTGAACTTGGTGGCAA
GTTTGAAGATGTCATTCTTGCTTTGATGACTCCTTTGCCGCAATTCTATGCAAAGGAATT
GCATGATGCAATTTCCGGCATTGGAACTGACGAAGACGCTATCATCGAAATTCTCTGCAC
ACTCTCCAACTATGGCATTCGTACAATTGCAGAATTCTACGAACAACTGTATGGAAATTC
ACTCGAAAGCGACTTGAAGGGAGACACCTCAGGTTTGATTCTTTAAGCGTTTATGCGTAT
CATTAGTGCAAGGCAATCGCGATGAAAACAATGGTGTTGATCAAGGTTCTGCTCTTGCTG
ATGCTACTGCACTTTATGAAGCCGGTGAAGGACAATGGGGCACTGATGAGTCAGTTTTCA
ATCAAATTCTTGTAACCAGATCATACCAACAATTGAGACAAGTCTTTTTGGAATATGAGG
CTATGAGCGGCCACGACATTGAAAAAGCTATCAAGCGTGAATTCTCAGGAAACGCTGAAA
AAGGATTCCTCGCAATCGCCAAGGTTGTCAAATCAAAGGTTGATTTCTTTGCTGAAAAAC
TCTACGAGAGCATGAAGGGCTTAGGTACGAATGACAAGACATTGATTCGTATCATTGTTT
CACGCTCAGAAATTGATTTGGGTGACATCAAAGAAGCATTTGAAGCCAAGTATGGAAAAA
GCCTCGAGAGCTGGGTTAAGGATGAACTATCGAGTGATTATGAGCGAGTTATGGTTTGCC
TTCTTGGATCTTAA

>g10800.t43 Gene=g10800 Length=123
MKGFGTDEKAIIEVLARRGIVQRLEIASAYKTNFGKDLINDLKSELGGKFEDVILALMTP
LPQFYAKELHDAISGIGTDEDAIIEILCTLSNYGIRTIAEFYEQLYGNSLESDLKGDTSG
LIL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g10800.t43 Gene3D G3DSA:1.10.220.10 - 1 59 3.7E-22
13 g10800.t43 Gene3D G3DSA:1.10.220.10 - 61 122 1.8E-21
3 g10800.t43 PANTHER PTHR10502 ANNEXIN 1 118 4.7E-46
4 g10800.t43 PANTHER PTHR10502:SF212 ANNEXIN B9 1 118 4.7E-46
10 g10800.t43 PRINTS PR00196 Annexin family signature 2 24 1.6E-24
7 g10800.t43 PRINTS PR00200 Annexin type IV signature 13 22 4.2E-5
5 g10800.t43 PRINTS PR00200 Annexin type IV signature 24 34 4.2E-5
9 g10800.t43 PRINTS PR00196 Annexin family signature 42 58 1.6E-24
6 g10800.t43 PRINTS PR00200 Annexin type IV signature 52 67 4.2E-5
11 g10800.t43 PRINTS PR00196 Annexin family signature 69 90 1.6E-24
8 g10800.t43 PRINTS PR00200 Annexin type IV signature 94 108 4.2E-5
2 g10800.t43 Pfam PF00191 Annexin 1 57 3.6E-19
1 g10800.t43 Pfam PF00191 Annexin 65 120 1.1E-19
15 g10800.t43 ProSitePatterns PS00223 Annexin repeat signature. 5 57 -
18 g10800.t43 ProSiteProfiles PS51897 Annexin repeat profile. 1 59 23.568
19 g10800.t43 ProSiteProfiles PS51897 Annexin repeat profile. 60 123 23.154
16 g10800.t43 SMART SM00335 annex3 5 57 4.1E-22
17 g10800.t43 SMART SM00335 annex3 77 123 2.8E-12
12 g10800.t43 SUPERFAMILY SSF47874 Annexin 1 120 1.13E-44

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed