Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B9.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10800 g10800.t44 TTS g10800.t44 12050020 12050020
chr_1 g10800 g10800.t44 isoform g10800.t44 12050198 12057179
chr_1 g10800 g10800.t44 exon g10800.t44.exon1 12050198 12050251
chr_1 g10800 g10800.t44 cds g10800.t44.CDS1 12050198 12050251
chr_1 g10800 g10800.t44 exon g10800.t44.exon2 12052686 12052867
chr_1 g10800 g10800.t44 cds g10800.t44.CDS2 12052686 12052867
chr_1 g10800 g10800.t44 exon g10800.t44.exon3 12052960 12053108
chr_1 g10800 g10800.t44 cds g10800.t44.CDS3 12052960 12053108
chr_1 g10800 g10800.t44 exon g10800.t44.exon4 12053171 12053303
chr_1 g10800 g10800.t44 cds g10800.t44.CDS4 12053171 12053303
chr_1 g10800 g10800.t44 exon g10800.t44.exon5 12053380 12053508
chr_1 g10800 g10800.t44 cds g10800.t44.CDS5 12053380 12053508
chr_1 g10800 g10800.t44 exon g10800.t44.exon6 12053572 12053869
chr_1 g10800 g10800.t44 cds g10800.t44.CDS6 12053572 12053869
chr_1 g10800 g10800.t44 exon g10800.t44.exon7 12055388 12055446
chr_1 g10800 g10800.t44 cds g10800.t44.CDS7 12055388 12055417
chr_1 g10800 g10800.t44 exon g10800.t44.exon8 12057178 12057179
chr_1 g10800 g10800.t44 TSS g10800.t44 12057215 12057215

Sequences

>g10800.t44 Gene=g10800 Length=1006
ACAGTCGTATTAATTGTAAAGAGCAGCGAAAATGAGTTCAGCAGCCTACTATCCATTCCA
ATGCAAACCAACCGTTTACCCTGCCGATCCTTTTGACCCAAATGAAGATGCAGGTATCTT
GAGAAAGGCAATGAAAGGATTTGGAACTGATGAAAAGGCAATTATTGAAGTGCTTGCTCG
TCGTGGAATTGTTCAACGTCTTGAGATTGCTTCGGCATATAAGACCAACTTTGGCAAGGA
TTTGATTAATGATTTGAAAAGTGAACTTGGTGGCAAGTTTGAAGATGTCATTCTTGCTTT
GATGACTCCTTTGCCGCAATTCTATGCAAAGGAATTGCATGATGCAATTTCCGGCATTGG
AACTGACGAAGACGCTATCATCGAAATTCTCTGCACACTCTCCAACTATGGCATTCGTAC
AATTGCAGAATTCTACGAACAACTGTATGGAAATTCACTCGAAAGCGACTTGAAGGGAGA
CACCTCAGGATTCTTTAAGCGTTTATGCGTATCATTAGTGCAAGGCAATCGCGATGAAAA
CAATGGTGTTGATCAAGGTTCTGCTCTTGCTGATGCTACTGCACTTTATGAAGCCGGTGA
AGGACAATGGGGCACTGATGAGTCAGTTTTCAATCAAATTCTTGTAACCAGATCATACCA
ACAATTGAGACAAGTCTTTTTGGAATATGAGGCTATGAGCGGCCACGACATTGAAAAAGC
TATCAAGCGTGAATTCTCAGGAAACGCTGAAAAAGGATTCCTCGCAATCGCCAAGGTTGT
CAAATCAAAGGTTGATTTCTTTGCTGAAAAACTCTACGAGAGCATGAAGGGCTTAGGTAC
GAATGACAAGACATTGATTCGTATCATTGTTTCACGCTCAGAAATTGATTTGGGTGACAT
CAAAGAAGCATTTGAAGCCAAGTATGGAAAAAGCCTCGAGAGCTGGGTTAAGGATGAACT
ATCGAGTGATTATGAGCGAGTTATGGTTTGCCTTCTTGGATCTTAA

>g10800.t44 Gene=g10800 Length=324
MSSAAYYPFQCKPTVYPADPFDPNEDAGILRKAMKGFGTDEKAIIEVLARRGIVQRLEIA
SAYKTNFGKDLINDLKSELGGKFEDVILALMTPLPQFYAKELHDAISGIGTDEDAIIEIL
CTLSNYGIRTIAEFYEQLYGNSLESDLKGDTSGFFKRLCVSLVQGNRDENNGVDQGSALA
DATALYEAGEGQWGTDESVFNQILVTRSYQQLRQVFLEYEAMSGHDIEKAIKREFSGNAE
KGFLAIAKVVKSKVDFFAEKLYESMKGLGTNDKTLIRIIVSRSEIDLGDIKEAFEAKYGK
SLESWVKDELSSDYERVMVCLLGS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
17 g10800.t44 Gene3D G3DSA:1.10.220.10 - 20 92 1.3E-27
15 g10800.t44 Gene3D G3DSA:1.10.220.10 - 94 165 6.9E-26
14 g10800.t44 Gene3D G3DSA:1.10.220.10 - 166 252 2.9E-30
16 g10800.t44 Gene3D G3DSA:1.10.220.10 - 254 324 5.1E-26
5 g10800.t44 PANTHER PTHR10502 ANNEXIN 7 322 7.6E-142
6 g10800.t44 PANTHER PTHR10502:SF212 ANNEXIN B9 7 322 7.6E-142
12 g10800.t44 PRINTS PR00196 Annexin family signature 35 57 3.1E-56
7 g10800.t44 PRINTS PR00196 Annexin family signature 75 91 3.1E-56
10 g10800.t44 PRINTS PR00196 Annexin family signature 102 123 3.1E-56
9 g10800.t44 PRINTS PR00196 Annexin family signature 185 211 3.1E-56
11 g10800.t44 PRINTS PR00196 Annexin family signature 265 285 3.1E-56
8 g10800.t44 PRINTS PR00196 Annexin family signature 293 308 3.1E-56
4 g10800.t44 Pfam PF00191 Annexin 26 90 2.3E-22
2 g10800.t44 Pfam PF00191 Annexin 98 162 2.4E-22
3 g10800.t44 Pfam PF00191 Annexin 181 246 1.7E-23
1 g10800.t44 Pfam PF00191 Annexin 256 321 5.0E-23
19 g10800.t44 ProSitePatterns PS00223 Annexin repeat signature. 38 90 -
18 g10800.t44 ProSitePatterns PS00223 Annexin repeat signature. 269 321 -
27 g10800.t44 ProSiteProfiles PS51897 Annexin repeat profile. 21 92 26.995
26 g10800.t44 ProSiteProfiles PS51897 Annexin repeat profile. 93 164 27.041
24 g10800.t44 ProSiteProfiles PS51897 Annexin repeat profile. 176 248 27.356
25 g10800.t44 ProSiteProfiles PS51897 Annexin repeat profile. 252 323 27.946
22 g10800.t44 SMART SM00335 annex3 38 90 4.1E-22
21 g10800.t44 SMART SM00335 annex3 110 162 3.3E-21
23 g10800.t44 SMART SM00335 annex3 194 246 5.4E-20
20 g10800.t44 SMART SM00335 annex3 269 321 6.2E-23
13 g10800.t44 SUPERFAMILY SSF47874 Annexin 6 323 4.45E-120

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values