General information for g10800.t46
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Annexin B9.
Parent gene
- The parent gene g10800 is located on chr_1: 12053250..12057223 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10800 | g10800.t46 | TTS | g10800.t46 | 12050020 | 12050020 |
| chr_1 | g10800 | g10800.t46 | isoform | g10800.t46 | 12050198 | 12057179 |
| chr_1 | g10800 | g10800.t46 | exon | g10800.t46.exon1 | 12050198 | 12051144 |
| chr_1 | g10800 | g10800.t46 | cds | g10800.t46.CDS1 | 12051091 | 12051144 |
| chr_1 | g10800 | g10800.t46 | exon | g10800.t46.exon2 | 12052686 | 12052867 |
| chr_1 | g10800 | g10800.t46 | cds | g10800.t46.CDS2 | 12052686 | 12052867 |
| chr_1 | g10800 | g10800.t46 | exon | g10800.t46.exon3 | 12052960 | 12053108 |
| chr_1 | g10800 | g10800.t46 | cds | g10800.t46.CDS3 | 12052960 | 12053108 |
| chr_1 | g10800 | g10800.t46 | exon | g10800.t46.exon4 | 12053171 | 12053303 |
| chr_1 | g10800 | g10800.t46 | cds | g10800.t46.CDS4 | 12053171 | 12053303 |
| chr_1 | g10800 | g10800.t46 | exon | g10800.t46.exon5 | 12053380 | 12053496 |
| chr_1 | g10800 | g10800.t46 | cds | g10800.t46.CDS5 | 12053380 | 12053496 |
| chr_1 | g10800 | g10800.t46 | exon | g10800.t46.exon6 | 12053572 | 12053869 |
| chr_1 | g10800 | g10800.t46 | cds | g10800.t46.CDS6 | 12053572 | 12053869 |
| chr_1 | g10800 | g10800.t46 | exon | g10800.t46.exon7 | 12055388 | 12055446 |
| chr_1 | g10800 | g10800.t46 | cds | g10800.t46.CDS7 | 12055388 | 12055417 |
| chr_1 | g10800 | g10800.t46 | exon | g10800.t46.exon8 | 12057132 | 12057179 |
| chr_1 | g10800 | g10800.t46 | TSS | g10800.t46 | 12057215 | 12057215 |
Sequences
>g10800.t46 Gene=g10800 Length=1933
ACGTAAGTGATCACTTTCAAGTGTAATAAAAGTTAAATTTATCTTAAAAGTCGTATTAAT
TGTAAAGAGCAGCGAAAATGAGTTCAGCAGCCTACTATCCATTCCAATGCAAACCAACCG
TTTACCCTGCCGATCCTTTTGACCCAAATGAAGATGCAGGTATCTTGAGAAAGGCAATGA
AAGGATTTGGAACTGATGAAAAGGCAATTATTGAAGTGCTTGCTCGTCGTGGAATTGTTC
AACGTCTTGAGATTGCTTCGGCATATAAGACCAACTTTGGCAAGGATTTGATTAATGATT
TGAAAAGTGAACTTGGTGGCAAGTTTGAAGATGTCATTCTTGCTTTGATGACTCCTTTGC
CGCAATTCTATGCAAAGGAATTGCATGATGCAATTTCCGGCATTGACGCTATCATCGAAA
TTCTCTGCACACTCTCCAACTATGGCATTCGTACAATTGCAGAATTCTACGAACAACTGT
ATGGAAATTCACTCGAAAGCGACTTGAAGGGAGACACCTCAGGATTCTTTAAGCGTTTAT
GCGTATCATTAGTGCAAGGCAATCGCGATGAAAACAATGGTGTTGATCAAGGTTCTGCTC
TTGCTGATGCTACTGCACTTTATGAAGCCGGTGAAGGACAATGGGGCACTGATGAGTCAG
TTTTCAATCAAATTCTTGTAACCAGATCATACCAACAATTGAGACAAGTCTTTTTGGAAT
ATGAGGCTATGAGCGGCCACGACATTGAAAAAGCTATCAAGCGTGAATTCTCAGGAAACG
CTGAAAAAGGATTCCTCGCAATCGCCAAGGTTGTCAAATCAAAGGTTGATTTCTTTGCTG
AAAAACTCTACGAGAGCATGAAGGGCTTAGGTACGAATGACAAGACATTGATTCGTATCA
TTGTTTCACGCTCAGAAATTGATTTGGGTGACATCAAAGAAGCATTTGAAGCCAAGTATG
GAAAAAGCCTCGAGAGCTGGGTTAAGGATGAGCTAAACTCTGAAATTGGACTCTTATTGT
ATAATCTTGTTGCATATTAAAAACGATACTTAAAAGCTTTGCAACATGGGCTTCTACATT
TTCCTTCTTTTGATTTTTTTATCATAAAATGAGTTTCAATTAATTATTTTCTTTTATTAT
TAATATTTTTTCATAATTTTTTTTGTTAACCAGATAAGATATTGGAGAGTTACTTTCATA
GATGCATGCATTATGTTATGCTTTTTTTGAGATTTAGTTTTTGAATCAAAGTAGATAAAT
TAAATTTTGGGAAAAGCAATTCTCTTTATGTTTCATGTAAAAATTTATAATTTCTTTTCG
GCACAAGAATTTCCACTAAAAAGATTATGCGTTCTTTTAATTTAAATTCCTTCTCAATTA
TTTCTTATTTTATCATTTTTTATTTGGGAAATGATAATAGGAAGATTGTGGTGGCGATCT
AGGTGAATTGTTGGCCGAGCTGTGCGCATACTAAGACATCGATAAAATCAAAAAAAGCGT
AATGCAATGCTATGCAGATAAAAATGTTCGATGTGTATCAATTTTGAATGACACATAAAT
TTTTACCAATAATTTTTGAATATTAATCTATGAATGTATTTTTATTAAGTTATTTTTTAC
CTTCATGTATTCAATGCACATCTTTCCCTGTGAGTTGATAAATTTTTACATATGTAGAAT
TCTAAATAGAAAGAAAGAGAATTGTGCTTTAACATAATATATACCTTTCTTAACTATCCT
TGTATTGTGTGTGTACTATTTCCTTTAATATCTGATAATGACATAAAAGATTTTTTGGGG
AAATGTCATAAAGTTATAAAATCCATACAACAATCATAATTTACTTAAAATTTAATTTTC
AATAAATTCAATTTCACAGGATGAACTATCGAGTGATTATGAGCGAGTTATGGTTTGCCT
TCTTGGATCTTAA
>g10800.t46 Gene=g10800 Length=320
MSSAAYYPFQCKPTVYPADPFDPNEDAGILRKAMKGFGTDEKAIIEVLARRGIVQRLEIA
SAYKTNFGKDLINDLKSELGGKFEDVILALMTPLPQFYAKELHDAISGIDAIIEILCTLS
NYGIRTIAEFYEQLYGNSLESDLKGDTSGFFKRLCVSLVQGNRDENNGVDQGSALADATA
LYEAGEGQWGTDESVFNQILVTRSYQQLRQVFLEYEAMSGHDIEKAIKREFSGNAEKGFL
AIAKVVKSKVDFFAEKLYESMKGLGTNDKTLIRIIVSRSEIDLGDIKEAFEAKYGKSLES
WVKDELNSEIGLLLYNLVAY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 15 | g10800.t46 | Gene3D | G3DSA:1.10.220.10 | - | 20 | 92 | 1.3E-27 |
| 14 | g10800.t46 | Gene3D | G3DSA:1.10.220.10 | - | 95 | 162 | 7.9E-19 |
| 16 | g10800.t46 | Gene3D | G3DSA:1.10.220.10 | - | 163 | 248 | 2.8E-30 |
| 13 | g10800.t46 | Gene3D | G3DSA:1.10.220.10 | - | 250 | 319 | 7.4E-22 |
| 5 | g10800.t46 | PANTHER | PTHR10502 | ANNEXIN | 7 | 317 | 4.2E-135 |
| 6 | g10800.t46 | PANTHER | PTHR10502:SF212 | ANNEXIN B9 | 7 | 317 | 4.2E-135 |
| 11 | g10800.t46 | PRINTS | PR00196 | Annexin family signature | 35 | 57 | 4.3E-46 |
| 7 | g10800.t46 | PRINTS | PR00196 | Annexin family signature | 75 | 91 | 4.3E-46 |
| 9 | g10800.t46 | PRINTS | PR00196 | Annexin family signature | 181 | 207 | 4.3E-46 |
| 8 | g10800.t46 | PRINTS | PR00196 | Annexin family signature | 261 | 281 | 4.3E-46 |
| 10 | g10800.t46 | PRINTS | PR00196 | Annexin family signature | 289 | 304 | 4.3E-46 |
| 4 | g10800.t46 | Pfam | PF00191 | Annexin | 26 | 90 | 2.2E-22 |
| 1 | g10800.t46 | Pfam | PF00191 | Annexin | 99 | 158 | 1.5E-15 |
| 3 | g10800.t46 | Pfam | PF00191 | Annexin | 177 | 242 | 1.6E-23 |
| 2 | g10800.t46 | Pfam | PF00191 | Annexin | 252 | 309 | 6.4E-19 |
| 17 | g10800.t46 | ProSitePatterns | PS00223 | Annexin repeat signature. | 38 | 90 | - |
| 18 | g10800.t46 | ProSitePatterns | PS00223 | Annexin repeat signature. | 265 | 317 | - |
| 25 | g10800.t46 | ProSiteProfiles | PS51897 | Annexin repeat profile. | 21 | 92 | 26.995 |
| 26 | g10800.t46 | ProSiteProfiles | PS51897 | Annexin repeat profile. | 93 | 160 | 17.634 |
| 23 | g10800.t46 | ProSiteProfiles | PS51897 | Annexin repeat profile. | 172 | 244 | 27.356 |
| 24 | g10800.t46 | ProSiteProfiles | PS51897 | Annexin repeat profile. | 248 | 319 | 22.801 |
| 20 | g10800.t46 | SMART | SM00335 | annex3 | 38 | 90 | 4.1E-22 |
| 21 | g10800.t46 | SMART | SM00335 | annex3 | 110 | 158 | 9.4E-14 |
| 19 | g10800.t46 | SMART | SM00335 | annex3 | 190 | 242 | 5.4E-20 |
| 22 | g10800.t46 | SMART | SM00335 | annex3 | 265 | 317 | 2.7E-15 |
| 12 | g10800.t46 | SUPERFAMILY | SSF47874 | Annexin | 6 | 317 | 5.5E-112 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005544 | calcium-dependent phospholipid binding | MF |
| GO:0005509 | calcium ion binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
