Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B9.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10800 g10800.t55 isoform g10800.t55 12051126 12057223
chr_1 g10800 g10800.t55 exon g10800.t55.exon1 12051126 12051144
chr_1 g10800 g10800.t55 cds g10800.t55.CDS1 12051127 12051144
chr_1 g10800 g10800.t55 exon g10800.t55.exon2 12052686 12052867
chr_1 g10800 g10800.t55 cds g10800.t55.CDS2 12052686 12052867
chr_1 g10800 g10800.t55 exon g10800.t55.exon3 12052960 12053108
chr_1 g10800 g10800.t55 cds g10800.t55.CDS3 12052960 12053108
chr_1 g10800 g10800.t55 exon g10800.t55.exon4 12053171 12053303
chr_1 g10800 g10800.t55 cds g10800.t55.CDS4 12053171 12053303
chr_1 g10800 g10800.t55 exon g10800.t55.exon5 12053380 12053508
chr_1 g10800 g10800.t55 cds g10800.t55.CDS5 12053380 12053508
chr_1 g10800 g10800.t55 exon g10800.t55.exon6 12053572 12053869
chr_1 g10800 g10800.t55 cds g10800.t55.CDS6 12053572 12053800
chr_1 g10800 g10800.t55 exon g10800.t55.exon7 12057132 12057223
chr_1 g10800 g10800.t55 TSS g10800.t55 12057215 12057215
chr_1 g10800 g10800.t55 TTS g10800.t55 NA NA

Sequences

>g10800.t55 Gene=g10800 Length=1002
ATTCTCTCAGTTTCAATTTGAACTTCGAGTGAGTAAGATTAAAAACGTAAGTGATCACTT
TCAAGTGTAATAAAAGTTAAATTTATCTTAAATGCAAACCAACCGTTTACCCTGCCGATC
CTTTTGACCCAAATGAAGATGCAGGTATCTTGAGAAAGGCAATGAAAGGATTTGGAACTG
ATGAAAAGGCAATTATTGAAGTGCTTGCTCGTCGTGGAATTGTTCAACGTCTTGAGATTG
CTTCGGCATATAAGACCAACTTTGGCAAGGATTTGATTAATGATTTGAAAAGTGAACTTG
GTGGCAAGTTTGAAGATGTCATTCTTGCTTTGATGACTCCTTTGCCGCAATTCTATGCAA
AGGAATTGCATGATGCAATTTCCGGCATTGGAACTGACGAAGACGCTATCATCGAAATTC
TCTGCACACTCTCCAACTATGGCATTCGTACAATTGCAGAATTCTACGAACAACTGTATG
GAAATTCACTCGAAAGCGACTTGAAGGGAGACACCTCAGGATTCTTTAAGCGTTTATGCG
TATCATTAGTGCAAGGCAATCGCGATGAAAACAATGGTGTTGATCAAGGTTCTGCTCTTG
CTGATGCTACTGCACTTTATGAAGCCGGTGAAGGACAATGGGGCACTGATGAGTCAGTTT
TCAATCAAATTCTTGTAACCAGATCATACCAACAATTGAGACAAGTCTTTTTGGAATATG
AGGCTATGAGCGGCCACGACATTGAAAAAGCTATCAAGCGTGAATTCTCAGGAAACGCTG
AAAAAGGATTCCTCGCAATCGCCAAGGTTGTCAAATCAAAGGTTGATTTCTTTGCTGAAA
AACTCTACGAGAGCATGAAGGGCTTAGGTACGAATGACAAGACATTGATTCGTATCATTG
TTTCACGCTCAGAAATTGATTTGGGTGACATCAAAGAAGCATTTGAAGCCAAGTATGGAA
AAAGCCTCGAGAGCTGGGTTAAGGATGAGCTAAACTCTGAAA

>g10800.t55 Gene=g10800 Length=280
MKGFGTDEKAIIEVLARRGIVQRLEIASAYKTNFGKDLINDLKSELGGKFEDVILALMTP
LPQFYAKELHDAISGIGTDEDAIIEILCTLSNYGIRTIAEFYEQLYGNSLESDLKGDTSG
FFKRLCVSLVQGNRDENNGVDQGSALADATALYEAGEGQWGTDESVFNQILVTRSYQQLR
QVFLEYEAMSGHDIEKAIKREFSGNAEKGFLAIAKVVKSKVDFFAEKLYESMKGLGTNDK
TLIRIIVSRSEIDLGDIKEAFEAKYGKSLESWVKDELNSE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g10800.t55 Gene3D G3DSA:1.10.220.10 - 1 59 2.0E-21
17 g10800.t55 Gene3D G3DSA:1.10.220.10 - 61 132 5.4E-26
16 g10800.t55 Gene3D G3DSA:1.10.220.10 - 133 219 2.1E-30
15 g10800.t55 Gene3D G3DSA:1.10.220.10 - 221 280 6.4E-21
5 g10800.t55 PANTHER PTHR10502 ANNEXIN 1 278 7.9E-126
6 g10800.t55 PANTHER PTHR10502:SF212 ANNEXIN B9 1 278 7.9E-126
11 g10800.t55 PRINTS PR00196 Annexin family signature 2 24 1.6E-56
10 g10800.t55 PRINTS PR00196 Annexin family signature 42 58 1.6E-56
12 g10800.t55 PRINTS PR00196 Annexin family signature 69 90 1.6E-56
8 g10800.t55 PRINTS PR00196 Annexin family signature 152 178 1.6E-56
9 g10800.t55 PRINTS PR00196 Annexin family signature 232 252 1.6E-56
7 g10800.t55 PRINTS PR00196 Annexin family signature 260 275 1.6E-56
4 g10800.t55 Pfam PF00191 Annexin 1 57 1.9E-18
2 g10800.t55 Pfam PF00191 Annexin 65 129 1.9E-22
3 g10800.t55 Pfam PF00191 Annexin 148 213 1.3E-23
1 g10800.t55 Pfam PF00191 Annexin 223 277 1.1E-18
18 g10800.t55 ProSitePatterns PS00223 Annexin repeat signature. 5 57 -
24 g10800.t55 ProSiteProfiles PS51897 Annexin repeat profile. 1 59 23.568
23 g10800.t55 ProSiteProfiles PS51897 Annexin repeat profile. 60 131 27.041
26 g10800.t55 ProSiteProfiles PS51897 Annexin repeat profile. 143 215 27.356
25 g10800.t55 ProSiteProfiles PS51897 Annexin repeat profile. 219 280 23.369
20 g10800.t55 SMART SM00335 annex3 5 57 4.1E-22
22 g10800.t55 SMART SM00335 annex3 77 129 3.3E-21
21 g10800.t55 SMART SM00335 annex3 161 213 5.4E-20
19 g10800.t55 SMART SM00335 annex3 236 277 1.1E-10
13 g10800.t55 SUPERFAMILY SSF47874 Annexin 1 278 3.8E-107

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values