Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B9.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10800 g10800.t68 isoform g10800.t68 12051639 12054207
chr_1 g10800 g10800.t68 exon g10800.t68.exon1 12051639 12052051
chr_1 g10800 g10800.t68 TTS g10800.t68 12051653 12051653
chr_1 g10800 g10800.t68 exon g10800.t68.exon2 12052686 12052867
chr_1 g10800 g10800.t68 exon g10800.t68.exon3 12052960 12053303
chr_1 g10800 g10800.t68 cds g10800.t68.CDS1 12053294 12053303
chr_1 g10800 g10800.t68 exon g10800.t68.exon4 12053376 12053508
chr_1 g10800 g10800.t68 cds g10800.t68.CDS2 12053376 12053508
chr_1 g10800 g10800.t68 exon g10800.t68.exon5 12053572 12053869
chr_1 g10800 g10800.t68 cds g10800.t68.CDS3 12053572 12053869
chr_1 g10800 g10800.t68 exon g10800.t68.exon6 12054193 12054207
chr_1 g10800 g10800.t68 cds g10800.t68.CDS4 12054193 12054207
chr_1 g10800 g10800.t68 TSS g10800.t68 12054437 12054437

Sequences

>g10800.t68 Gene=g10800 Length=1385
ATGAGTAAAAGAACGTGCAAACCAACCGTTTACCCTGCCGATCCTTTTGACCCAAATGAA
GATGCAGGTATCTTGAGAAAGGCAATGAAAGGATTTGGAACTGATGAAAAGGCAATTATT
GAAGTGCTTGCTCGTCGTGGAATTGTTCAACGTCTTGAGATTGCTTCGGCATATAAGACC
AACTTTGGCAAGGATTTGATTAATGATTTGAAAAGTGAACTTGGTGGCAAGTTTGAAGAT
GTCATTCTTGCTTTGATGACTCCTTTGCCGCAATTCTATGCAAAGGAATTGCATGATGCA
ATTTCCGGCATTGGAACTGACGAAGACGCTATCATCGAAATTCTCTGCACACTCTCCAAC
TATGGCATTCGTACAATTGCAGAATTCTACGAACAACTGTATGGAAATTCACTCGAAAGC
GACTTGAAGGGAGACACCTCAGGTTTGATTCTTTAAGCGTTTATGCGTATCATTAGTGCA
AGGCAATCGCGATGAAAACAATGGTGTTGATCAAGGTTCTGCTCTTGCTGATGCTACTGC
ACTTTATGAAGCCGGTGAAGGACAATGGGGCACTGATGAGTATTTTTTTTTAAAAAATTT
GAAATGAATTGTTTAAGCATAAATGTTTATTTTTTCAATAGGTCAGTTTTCAATCAAATT
CTTGTAACCAGATCATACCAACAATTGAGACAAGTCTTTTTGGAATATGAGGCTATGAGC
GGCCACGACATTGAAAAAGCTATCAAGCGTGAATTCTCAGGAAACGCTGAAAAAGGATTC
CTCGCAATCGCCAAGGTTGTCAAATCAAAGGTTGATTTCTTTGCTGAAAAACTCTACGAG
AGCATGAAGGGCTTAGGTACGAATGACAAGACATTGATTCGTATCATTGTTTCACGCTCA
GAAATTGATTTGGGTGACATCAAAGAAGCATTTGAAGCCAAGTATGGAAAAAGCCTCGAG
AGCTGGGTTAAGGGTGACACCTCAGGCGATTATAAAAAATGTTTGTTAGCACTTATTGGC
GAGTAGAAGCTCATCGCATGAACATTTAAAATCCGATATATGAAAATAATTAGTTATTAA
GAGATAACACACATACACAATATTATTGGACAAAAAATGTTTCTACATTTACACACTATG
AACATCATGTACTAAAATAATTTGTTTAAAAAAACTTCCATCAGTAATGTTCATTCACAA
TTTGCTTTTATTATTCGTTGGAAATTTGCAAAACTGTAGCTGTTAAAATTCACATAAAAT
ATTTTTTTAAAGTTGTTATATTCTTTGCAAGAAAAAAACTACATTTTAGGAAAGAACTAC
ATTTAAAAAAGCATTCAAATAAAATGATCGAAATAAAAAAGAGTAAAAACTAAACTGACA
ACTTT

>g10800.t68 Gene=g10800 Length=151
MSKRTCKPTVYPADPFDPNEDAGILRKAMKGFGTDEKAIIEVLARRGIVQRLEIASAYKT
NFGKDLINDLKSELGGKFEDVILALMTPLPQFYAKELHDAISGIGTDEDAIIEILCTLSN
YGIRTIAEFYEQLYGNSLESDLKGDTSGLIL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g10800.t68 Gene3D G3DSA:1.10.220.10 - 15 87 2.8E-28
14 g10800.t68 Gene3D G3DSA:1.10.220.10 - 89 150 2.8E-21
3 g10800.t68 PANTHER PTHR10502 ANNEXIN 4 146 1.4E-57
4 g10800.t68 PANTHER PTHR10502:SF212 ANNEXIN B9 4 146 1.4E-57
11 g10800.t68 PRINTS PR00196 Annexin family signature 30 52 2.4E-24
5 g10800.t68 PRINTS PR00200 Annexin type IV signature 41 50 7.1E-5
7 g10800.t68 PRINTS PR00200 Annexin type IV signature 52 62 7.1E-5
9 g10800.t68 PRINTS PR00196 Annexin family signature 70 86 2.4E-24
6 g10800.t68 PRINTS PR00200 Annexin type IV signature 80 95 7.1E-5
10 g10800.t68 PRINTS PR00196 Annexin family signature 97 118 2.4E-24
8 g10800.t68 PRINTS PR00200 Annexin type IV signature 122 136 7.1E-5
2 g10800.t68 Pfam PF00191 Annexin 21 85 5.0E-23
1 g10800.t68 Pfam PF00191 Annexin 93 148 1.8E-19
15 g10800.t68 ProSitePatterns PS00223 Annexin repeat signature. 33 85 -
18 g10800.t68 ProSiteProfiles PS51897 Annexin repeat profile. 16 87 26.995
19 g10800.t68 ProSiteProfiles PS51897 Annexin repeat profile. 88 151 23.154
17 g10800.t68 SMART SM00335 annex3 33 85 4.1E-22
16 g10800.t68 SMART SM00335 annex3 105 151 2.8E-12
12 g10800.t68 SUPERFAMILY SSF47874 Annexin 6 148 2.88E-53

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed