Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B9.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10800 g10800.t72 isoform g10800.t72 12051639 12055417
chr_1 g10800 g10800.t72 exon g10800.t72.exon1 12051639 12052051
chr_1 g10800 g10800.t72 TTS g10800.t72 12051653 12051653
chr_1 g10800 g10800.t72 cds g10800.t72.CDS1 12051998 12052051
chr_1 g10800 g10800.t72 exon g10800.t72.exon2 12052686 12052867
chr_1 g10800 g10800.t72 cds g10800.t72.CDS2 12052686 12052867
chr_1 g10800 g10800.t72 exon g10800.t72.exon3 12052960 12053108
chr_1 g10800 g10800.t72 cds g10800.t72.CDS3 12052960 12053108
chr_1 g10800 g10800.t72 exon g10800.t72.exon4 12053171 12053312
chr_1 g10800 g10800.t72 cds g10800.t72.CDS4 12053171 12053312
chr_1 g10800 g10800.t72 exon g10800.t72.exon5 12053404 12053508
chr_1 g10800 g10800.t72 cds g10800.t72.CDS5 12053404 12053508
chr_1 g10800 g10800.t72 exon g10800.t72.exon6 12053572 12053869
chr_1 g10800 g10800.t72 cds g10800.t72.CDS6 12053572 12053869
chr_1 g10800 g10800.t72 exon g10800.t72.exon7 12055388 12055417
chr_1 g10800 g10800.t72 cds g10800.t72.CDS7 12055388 12055417
chr_1 g10800 g10800.t72 TSS g10800.t72 12055446 12055446

Sequences

>g10800.t72 Gene=g10800 Length=1319
ATGAGTTCAGCAGCCTACTATCCATTCCAATGCAAACCAACCGTTTACCCTGCCGATCCT
TTTGACCCAAATGAAGATGCAGGTATCTTGAGAAAGGCAATGAAAGGATTTGGAACTGAT
GAAAAGGCAATTATTGAAGTGCTTGCTCGTCGTGGAATTGTTCAACGTCTTGAGATTGCT
TCGGCATATAAGACCAACTTTGGCAAGGATTTGATTAATGATTTGAAAAGTGAACTTGGT
GGCAAGTTTGAAGATGTCATTCTTGCTTTGATGACTCCTTTGCCGCAATTCTATGCAAAG
GAATTGCATGATGCAATTTCCGGCATTGGAACTGACGAAGACGCTATCATCGAAATTCTC
TGCACACTCTCCAACTATGGCATTCGTACAATTGCAGAATTCTACGAACAACTGTATGGA
AATTCACTCGAAATTTTGTTAGGATTCTTTAAGCGTTTATGCGTATCATTAGTGCAAGGC
AATCGCGATGAAAACAATGGTGTTGATCAAGGTTCTGCTCTTGCTGATGCTACTGCACTT
TATGAAGCCGGTGAAGGACAATGGGGCACTGATGAGTCAGTTTTCAATCAAATTCTTGTA
ACCAGATCATACCAACAATTGAGACAAGTCTTTTTGGAATATGAGGCTATGAGCGGCCAC
GACATTGAAAAAGCTATCAAGCGTGAATTCTCAGGAAACGCTGAAAAAGGATTCCTCGCA
ATCGCCAAGGTTGTCAAATCAAAGGTTGATTTCTTTGCTGAAAAACTCTACGAGAGCATG
AAGGGCTTAGGTACGAATGACAAGACATTGATTCGTATCATTGTTTCACGCTCAGAAATT
GATTTGGGTGACATCAAAGAAGCATTTGAAGCCAAGTATGGAAAAAGCCTCGAGAGCTGG
GTTAAGGGTGACACCTCAGGCGATTATAAAAAATGTTTGTTAGCACTTATTGGCGAGTAG
AAGCTCATCGCATGAACATTTAAAATCCGATATATGAAAATAATTAGTTATTAAGAGATA
ACACACATACACAATATTATTGGACAAAAAATGTTTCTACATTTACACACTATGAACATC
ATGTACTAAAATAATTTGTTTAAAAAAACTTCCATCAGTAATGTTCATTCACAATTTGCT
TTTATTATTCGTTGGAAATTTGCAAAACTGTAGCTGTTAAAATTCACATAAAATATTTTT
TTAAAGTTGTTATATTCTTTGCAAGAAAAAAACTACATTTTAGGAAAGAACTACATTTAA
AAAAGCATTCAAATAAAATGATCGAAATAAAAAAGAGTAAAAACTAAACTGACAACTTT

>g10800.t72 Gene=g10800 Length=319
MSSAAYYPFQCKPTVYPADPFDPNEDAGILRKAMKGFGTDEKAIIEVLARRGIVQRLEIA
SAYKTNFGKDLINDLKSELGGKFEDVILALMTPLPQFYAKELHDAISGIGTDEDAIIEIL
CTLSNYGIRTIAEFYEQLYGNSLEILLGFFKRLCVSLVQGNRDENNGVDQGSALADATAL
YEAGEGQWGTDESVFNQILVTRSYQQLRQVFLEYEAMSGHDIEKAIKREFSGNAEKGFLA
IAKVVKSKVDFFAEKLYESMKGLGTNDKTLIRIIVSRSEIDLGDIKEAFEAKYGKSLESW
VKGDTSGDYKKCLLALIGE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
17 g10800.t72 Gene3D G3DSA:1.10.220.10 - 20 92 1.3E-27
16 g10800.t72 Gene3D G3DSA:1.10.220.10 - 94 160 3.5E-17
15 g10800.t72 Gene3D G3DSA:1.10.220.10 - 161 247 2.8E-30
14 g10800.t72 Gene3D G3DSA:1.10.220.10 - 249 319 3.8E-29
5 g10800.t72 PANTHER PTHR10502 ANNEXIN 7 317 1.3E-140
6 g10800.t72 PANTHER PTHR10502:SF212 ANNEXIN B9 7 317 1.3E-140
12 g10800.t72 PRINTS PR00196 Annexin family signature 35 57 2.8E-58
7 g10800.t72 PRINTS PR00196 Annexin family signature 75 91 2.8E-58
9 g10800.t72 PRINTS PR00196 Annexin family signature 102 123 2.8E-58
11 g10800.t72 PRINTS PR00196 Annexin family signature 180 206 2.8E-58
8 g10800.t72 PRINTS PR00196 Annexin family signature 260 280 2.8E-58
10 g10800.t72 PRINTS PR00196 Annexin family signature 304 317 2.8E-58
2 g10800.t72 Pfam PF00191 Annexin 26 90 2.2E-22
4 g10800.t72 Pfam PF00191 Annexin 98 144 6.4E-14
1 g10800.t72 Pfam PF00191 Annexin 176 241 1.6E-23
3 g10800.t72 Pfam PF00191 Annexin 251 316 2.1E-25
18 g10800.t72 ProSitePatterns PS00223 Annexin repeat signature. 38 90 -
19 g10800.t72 ProSitePatterns PS00223 Annexin repeat signature. 264 316 -
27 g10800.t72 ProSiteProfiles PS51897 Annexin repeat profile. 21 92 26.995
25 g10800.t72 ProSiteProfiles PS51897 Annexin repeat profile. 93 144 12.405
26 g10800.t72 ProSiteProfiles PS51897 Annexin repeat profile. 171 243 27.356
24 g10800.t72 ProSiteProfiles PS51897 Annexin repeat profile. 247 318 29.939
20 g10800.t72 SMART SM00335 annex3 38 90 4.1E-22
23 g10800.t72 SMART SM00335 annex3 110 157 1.3E-8
22 g10800.t72 SMART SM00335 annex3 189 241 5.4E-20
21 g10800.t72 SMART SM00335 annex3 264 316 8.2E-26
13 g10800.t72 SUPERFAMILY SSF47874 Annexin 6 318 8.51E-116

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values