Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B9.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10800 g10800.t73 isoform g10800.t73 12051639 12055417
chr_1 g10800 g10800.t73 exon g10800.t73.exon1 12051639 12052051
chr_1 g10800 g10800.t73 TTS g10800.t73 12051653 12051653
chr_1 g10800 g10800.t73 cds g10800.t73.CDS1 12051998 12052051
chr_1 g10800 g10800.t73 exon g10800.t73.exon2 12052677 12052867
chr_1 g10800 g10800.t73 cds g10800.t73.CDS2 12052677 12052867
chr_1 g10800 g10800.t73 exon g10800.t73.exon3 12052960 12053108
chr_1 g10800 g10800.t73 cds g10800.t73.CDS3 12052960 12053108
chr_1 g10800 g10800.t73 exon g10800.t73.exon4 12053171 12053303
chr_1 g10800 g10800.t73 cds g10800.t73.CDS4 12053171 12053303
chr_1 g10800 g10800.t73 exon g10800.t73.exon5 12053380 12053508
chr_1 g10800 g10800.t73 cds g10800.t73.CDS5 12053380 12053508
chr_1 g10800 g10800.t73 exon g10800.t73.exon6 12053572 12053869
chr_1 g10800 g10800.t73 cds g10800.t73.CDS6 12053572 12053869
chr_1 g10800 g10800.t73 exon g10800.t73.exon7 12055388 12055417
chr_1 g10800 g10800.t73 cds g10800.t73.CDS7 12055388 12055417
chr_1 g10800 g10800.t73 TSS g10800.t73 12055446 12055446

Sequences

>g10800.t73 Gene=g10800 Length=1343
ATGAGTTCAGCAGCCTACTATCCATTCCAATGCAAACCAACCGTTTACCCTGCCGATCCT
TTTGACCCAAATGAAGATGCAGGTATCTTGAGAAAGGCAATGAAAGGATTTGGAACTGAT
GAAAAGGCAATTATTGAAGTGCTTGCTCGTCGTGGAATTGTTCAACGTCTTGAGATTGCT
TCGGCATATAAGACCAACTTTGGCAAGGATTTGATTAATGATTTGAAAAGTGAACTTGGT
GGCAAGTTTGAAGATGTCATTCTTGCTTTGATGACTCCTTTGCCGCAATTCTATGCAAAG
GAATTGCATGATGCAATTTCCGGCATTGGAACTGACGAAGACGCTATCATCGAAATTCTC
TGCACACTCTCCAACTATGGCATTCGTACAATTGCAGAATTCTACGAACAACTGTATGGA
AATTCACTCGAAAGCGACTTGAAGGGAGACACCTCAGGATTCTTTAAGCGTTTATGCGTA
TCATTAGTGCAAGGCAATCGCGATGAAAACAATGGTGTTGATCAAGGTTCTGCTCTTGCT
GATGCTACTGCACTTTATGAAGCCGGTGAAGGACAATGGGGCACTGATGAGTCAGTTTTC
AATCAAATTCTTGTAACCAGATCATACCAACAATTGAGACAAGTCTTTTTGGAATATGAG
GCTATGAGCGGCCACGACATTGAAAAAGCTATCAAGCGTGAATTCTCAGGAAACGCTGAA
AAAGGATTCCTCGCAATCGCCAAGGTTGTCAAATCAAAGGTTGATTTCTTTGCTGAAAAA
CTCTACGAGAGCATGAAGGGCTTAGGTACGAATGACAAGACATTGATTCGTATCATTGTT
TCACGCTCAGAAATTGATTTGGGTGACATCAAAGAAGCATTTGAAGCCAAGTATGGAAAA
AGCCTCGAGAGCTGGGTTAAGGTAATTTTTGGTGACACCTCAGGCGATTATAAAAAATGT
TTGTTAGCACTTATTGGCGAGTAGAAGCTCATCGCATGAACATTTAAAATCCGATATATG
AAAATAATTAGTTATTAAGAGATAACACACATACACAATATTATTGGACAAAAAATGTTT
CTACATTTACACACTATGAACATCATGTACTAAAATAATTTGTTTAAAAAAACTTCCATC
AGTAATGTTCATTCACAATTTGCTTTTATTATTCGTTGGAAATTTGCAAAACTGTAGCTG
TTAAAATTCACATAAAATATTTTTTTAAAGTTGTTATATTCTTTGCAAGAAAAAAACTAC
ATTTTAGGAAAGAACTACATTTAAAAAAGCATTCAAATAAAATGATCGAAATAAAAAAGA
GTAAAAACTAAACTGACAACTTT

>g10800.t73 Gene=g10800 Length=327
MSSAAYYPFQCKPTVYPADPFDPNEDAGILRKAMKGFGTDEKAIIEVLARRGIVQRLEIA
SAYKTNFGKDLINDLKSELGGKFEDVILALMTPLPQFYAKELHDAISGIGTDEDAIIEIL
CTLSNYGIRTIAEFYEQLYGNSLESDLKGDTSGFFKRLCVSLVQGNRDENNGVDQGSALA
DATALYEAGEGQWGTDESVFNQILVTRSYQQLRQVFLEYEAMSGHDIEKAIKREFSGNAE
KGFLAIAKVVKSKVDFFAEKLYESMKGLGTNDKTLIRIIVSRSEIDLGDIKEAFEAKYGK
SLESWVKVIFGDTSGDYKKCLLALIGE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g10800.t73 Gene3D G3DSA:1.10.220.10 - 20 92 1.4E-27
15 g10800.t73 Gene3D G3DSA:1.10.220.10 - 94 165 7.0E-26
14 g10800.t73 Gene3D G3DSA:1.10.220.10 - 166 252 2.9E-30
17 g10800.t73 Gene3D G3DSA:1.10.220.10 - 254 327 2.4E-26
5 g10800.t73 PANTHER PTHR10502 ANNEXIN 7 325 4.6E-143
6 g10800.t73 PANTHER PTHR10502:SF212 ANNEXIN B9 7 325 4.6E-143
12 g10800.t73 PRINTS PR00196 Annexin family signature 35 57 1.9E-55
7 g10800.t73 PRINTS PR00196 Annexin family signature 75 91 1.9E-55
10 g10800.t73 PRINTS PR00196 Annexin family signature 102 123 1.9E-55
9 g10800.t73 PRINTS PR00196 Annexin family signature 185 211 1.9E-55
11 g10800.t73 PRINTS PR00196 Annexin family signature 265 285 1.9E-55
8 g10800.t73 PRINTS PR00196 Annexin family signature 293 308 1.9E-55
3 g10800.t73 Pfam PF00191 Annexin 26 90 2.3E-22
1 g10800.t73 Pfam PF00191 Annexin 98 162 2.5E-22
2 g10800.t73 Pfam PF00191 Annexin 181 246 1.7E-23
4 g10800.t73 Pfam PF00191 Annexin 256 324 9.4E-23
18 g10800.t73 ProSitePatterns PS00223 Annexin repeat signature. 38 90 -
26 g10800.t73 ProSiteProfiles PS51897 Annexin repeat profile. 21 92 26.995
25 g10800.t73 ProSiteProfiles PS51897 Annexin repeat profile. 93 164 27.041
23 g10800.t73 ProSiteProfiles PS51897 Annexin repeat profile. 176 248 27.356
24 g10800.t73 ProSiteProfiles PS51897 Annexin repeat profile. 252 326 27.218
21 g10800.t73 SMART SM00335 annex3 38 90 4.1E-22
20 g10800.t73 SMART SM00335 annex3 110 162 3.3E-21
22 g10800.t73 SMART SM00335 annex3 194 246 5.4E-20
19 g10800.t73 SMART SM00335 annex3 269 324 3.6E-21
13 g10800.t73 SUPERFAMILY SSF47874 Annexin 6 326 4.71E-120

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values