Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B9.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10800 g10800.t74 isoform g10800.t74 12051639 12055437
chr_1 g10800 g10800.t74 exon g10800.t74.exon1 12051639 12052051
chr_1 g10800 g10800.t74 TTS g10800.t74 12051653 12051653
chr_1 g10800 g10800.t74 cds g10800.t74.CDS1 12051998 12052051
chr_1 g10800 g10800.t74 exon g10800.t74.exon2 12052686 12052867
chr_1 g10800 g10800.t74 cds g10800.t74.CDS2 12052686 12052867
chr_1 g10800 g10800.t74 exon g10800.t74.exon3 12052960 12053108
chr_1 g10800 g10800.t74 cds g10800.t74.CDS3 12052960 12053108
chr_1 g10800 g10800.t74 exon g10800.t74.exon4 12053171 12053303
chr_1 g10800 g10800.t74 cds g10800.t74.CDS4 12053171 12053303
chr_1 g10800 g10800.t74 exon g10800.t74.exon5 12053380 12053508
chr_1 g10800 g10800.t74 cds g10800.t74.CDS5 12053380 12053508
chr_1 g10800 g10800.t74 exon g10800.t74.exon6 12053572 12053848
chr_1 g10800 g10800.t74 cds g10800.t74.CDS6 12053572 12053848
chr_1 g10800 g10800.t74 exon g10800.t74.exon7 12055388 12055437
chr_1 g10800 g10800.t74 cds g10800.t74.CDS7 12055388 12055417
chr_1 g10800 g10800.t74 TSS g10800.t74 12055446 12055446

Sequences

>g10800.t74 Gene=g10800 Length=1333
AATTGTAAAGAGCAGCGAAAATGAGTTCAGCAGCCTACTATCCATTCCAAGCCGATCCTT
TTGACCCAAATGAAGATGCAGGTATCTTGAGAAAGGCAATGAAAGGATTTGGAACTGATG
AAAAGGCAATTATTGAAGTGCTTGCTCGTCGTGGAATTGTTCAACGTCTTGAGATTGCTT
CGGCATATAAGACCAACTTTGGCAAGGATTTGATTAATGATTTGAAAAGTGAACTTGGTG
GCAAGTTTGAAGATGTCATTCTTGCTTTGATGACTCCTTTGCCGCAATTCTATGCAAAGG
AATTGCATGATGCAATTTCCGGCATTGGAACTGACGAAGACGCTATCATCGAAATTCTCT
GCACACTCTCCAACTATGGCATTCGTACAATTGCAGAATTCTACGAACAACTGTATGGAA
ATTCACTCGAAAGCGACTTGAAGGGAGACACCTCAGGATTCTTTAAGCGTTTATGCGTAT
CATTAGTGCAAGGCAATCGCGATGAAAACAATGGTGTTGATCAAGGTTCTGCTCTTGCTG
ATGCTACTGCACTTTATGAAGCCGGTGAAGGACAATGGGGCACTGATGAGTCAGTTTTCA
ATCAAATTCTTGTAACCAGATCATACCAACAATTGAGACAAGTCTTTTTGGAATATGAGG
CTATGAGCGGCCACGACATTGAAAAAGCTATCAAGCGTGAATTCTCAGGAAACGCTGAAA
AAGGATTCCTCGCAATCGCCAAGGTTGTCAAATCAAAGGTTGATTTCTTTGCTGAAAAAC
TCTACGAGAGCATGAAGGGCTTAGGTACGAATGACAAGACATTGATTCGTATCATTGTTT
CACGCTCAGAAATTGATTTGGGTGACATCAAAGAAGCATTTGAAGCCAAGTATGGAAAAA
GCCTCGAGAGCTGGGTTAAGGGTGACACCTCAGGCGATTATAAAAAATGTTTGTTAGCAC
TTATTGGCGAGTAGAAGCTCATCGCATGAACATTTAAAATCCGATATATGAAAATAATTA
GTTATTAAGAGATAACACACATACACAATATTATTGGACAAAAAATGTTTCTACATTTAC
ACACTATGAACATCATGTACTAAAATAATTTGTTTAAAAAAACTTCCATCAGTAATGTTC
ATTCACAATTTGCTTTTATTATTCGTTGGAAATTTGCAAAACTGTAGCTGTTAAAATTCA
CATAAAATATTTTTTTAAAGTTGTTATATTCTTTGCAAGAAAAAAACTACATTTTAGGAA
AGAACTACATTTAAAAAAGCATTCAAATAAAATGATCGAAATAAAAAAGAGTAAAAACTA
AACTGACAACTTT

>g10800.t74 Gene=g10800 Length=317
MSSAAYYPFQADPFDPNEDAGILRKAMKGFGTDEKAIIEVLARRGIVQRLEIASAYKTNF
GKDLINDLKSELGGKFEDVILALMTPLPQFYAKELHDAISGIGTDEDAIIEILCTLSNYG
IRTIAEFYEQLYGNSLESDLKGDTSGFFKRLCVSLVQGNRDENNGVDQGSALADATALYE
AGEGQWGTDESVFNQILVTRSYQQLRQVFLEYEAMSGHDIEKAIKREFSGNAEKGFLAIA
KVVKSKVDFFAEKLYESMKGLGTNDKTLIRIIVSRSEIDLGDIKEAFEAKYGKSLESWVK
GDTSGDYKKCLLALIGE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g10800.t74 Gene3D G3DSA:1.10.220.10 - 13 85 1.3E-27
15 g10800.t74 Gene3D G3DSA:1.10.220.10 - 87 158 6.7E-26
17 g10800.t74 Gene3D G3DSA:1.10.220.10 - 159 245 2.7E-30
16 g10800.t74 Gene3D G3DSA:1.10.220.10 - 247 317 3.7E-29
5 g10800.t74 PANTHER PTHR10502 ANNEXIN 10 315 2.2E-141
6 g10800.t74 PANTHER PTHR10502:SF212 ANNEXIN B9 10 315 2.2E-141
10 g10800.t74 PRINTS PR00196 Annexin family signature 28 50 2.7E-58
8 g10800.t74 PRINTS PR00196 Annexin family signature 68 84 2.7E-58
7 g10800.t74 PRINTS PR00196 Annexin family signature 95 116 2.7E-58
12 g10800.t74 PRINTS PR00196 Annexin family signature 178 204 2.7E-58
9 g10800.t74 PRINTS PR00196 Annexin family signature 258 278 2.7E-58
11 g10800.t74 PRINTS PR00196 Annexin family signature 302 315 2.7E-58
1 g10800.t74 Pfam PF00191 Annexin 19 83 2.2E-22
2 g10800.t74 Pfam PF00191 Annexin 91 155 2.3E-22
4 g10800.t74 Pfam PF00191 Annexin 174 239 1.6E-23
3 g10800.t74 Pfam PF00191 Annexin 249 314 2.1E-25
19 g10800.t74 ProSitePatterns PS00223 Annexin repeat signature. 31 83 -
18 g10800.t74 ProSitePatterns PS00223 Annexin repeat signature. 262 314 -
27 g10800.t74 ProSiteProfiles PS51897 Annexin repeat profile. 14 85 26.995
24 g10800.t74 ProSiteProfiles PS51897 Annexin repeat profile. 86 157 27.041
26 g10800.t74 ProSiteProfiles PS51897 Annexin repeat profile. 169 241 27.356
25 g10800.t74 ProSiteProfiles PS51897 Annexin repeat profile. 245 316 29.939
23 g10800.t74 SMART SM00335 annex3 31 83 4.1E-22
22 g10800.t74 SMART SM00335 annex3 103 155 3.3E-21
21 g10800.t74 SMART SM00335 annex3 187 239 5.4E-20
20 g10800.t74 SMART SM00335 annex3 262 314 8.2E-26
13 g10800.t74 SUPERFAMILY SSF47874 Annexin 10 316 7.72E-121

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed