Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B9.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10800 g10800.t75 isoform g10800.t75 12051639 12055446
chr_1 g10800 g10800.t75 exon g10800.t75.exon1 12051639 12052051
chr_1 g10800 g10800.t75 TTS g10800.t75 12051653 12051653
chr_1 g10800 g10800.t75 exon g10800.t75.exon2 12052686 12052867
chr_1 g10800 g10800.t75 exon g10800.t75.exon3 12052960 12053108
chr_1 g10800 g10800.t75 exon g10800.t75.exon4 12053171 12053303
chr_1 g10800 g10800.t75 cds g10800.t75.CDS1 12053294 12053303
chr_1 g10800 g10800.t75 exon g10800.t75.exon5 12053388 12053508
chr_1 g10800 g10800.t75 cds g10800.t75.CDS2 12053388 12053508
chr_1 g10800 g10800.t75 exon g10800.t75.exon6 12053572 12053869
chr_1 g10800 g10800.t75 cds g10800.t75.CDS3 12053572 12053869
chr_1 g10800 g10800.t75 exon g10800.t75.exon7 12055388 12055446
chr_1 g10800 g10800.t75 cds g10800.t75.CDS4 12055388 12055417
chr_1 g10800 g10800.t75 TSS g10800.t75 12055446 12055446

Sequences

>g10800.t75 Gene=g10800 Length=1355
AGTCGTATTAATTGTAAAGAGCAGCGAAAATGAGTTCAGCAGCCTACTATCCATTCCAAT
GCAAACCAACCGTTTACCCTGCCGATCCTTTTGACCCAAATGAAGATGCAGGTATCTTGA
GAAAGGCAATGAAAGGATTTGGAACTGATGAAAAGGCAATTATTGAAGTGCTTGCTCGTC
GTGGAATTGTTCAACGTCTTGAGATTGCTTCGGCATATAAGACCAACTTTGGCAAGGATT
TGATTAATGATTTGAAAAGTGAACTTGGTGGCAAGTTTGAAGATGTCATTCTTGCTTTGA
TGACTCCTTTGCCGCAATTCTATGCAAAGGAATTGCATGATGCAATTTCCGGCATTGGAA
CTGACGAAGACGCTATCATCGAAATTCTCTGCACACTCTCCAACTATGGCATTCGTACAA
TTGCAGAATTCTACGAACAACTGTATGGAAATTCACTCGAAAGCGACTTGAAGGGAGAGA
TTCTTTAAGCGTTTATGCGTATCATTAGTGCAAGGCAATCGCGATGAAAACAATGGTGTT
GATCAAGGTTCTGCTCTTGCTGATGCTACTGCACTTTATGAAGCCGGTGAAGGACAATGG
GGCACTGATGAGTCAGTTTTCAATCAAATTCTTGTAACCAGATCATACCAACAATTGAGA
CAAGTCTTTTTGGAATATGAGGCTATGAGCGGCCACGACATTGAAAAAGCTATCAAGCGT
GAATTCTCAGGAAACGCTGAAAAAGGATTCCTCGCAATCGCCAAGGTTGTCAAATCAAAG
GTTGATTTCTTTGCTGAAAAACTCTACGAGAGCATGAAGGGCTTAGGTACGAATGACAAG
ACATTGATTCGTATCATTGTTTCACGCTCAGAAATTGATTTGGGTGACATCAAAGAAGCA
TTTGAAGCCAAGTATGGAAAAAGCCTCGAGAGCTGGGTTAAGGGTGACACCTCAGGCGAT
TATAAAAAATGTTTGTTAGCACTTATTGGCGAGTAGAAGCTCATCGCATGAACATTTAAA
ATCCGATATATGAAAATAATTAGTTATTAAGAGATAACACACATACACAATATTATTGGA
CAAAAAATGTTTCTACATTTACACACTATGAACATCATGTACTAAAATAATTTGTTTAAA
AAAACTTCCATCAGTAATGTTCATTCACAATTTGCTTTTATTATTCGTTGGAAATTTGCA
AAACTGTAGCTGTTAAAATTCACATAAAATATTTTTTTAAAGTTGTTATATTCTTTGCAA
GAAAAAAACTACATTTTAGGAAAGAACTACATTTAAAAAAGCATTCAAATAAAATGATCG
AAATAAAAAAGAGTAAAAACTAAACTGACAACTTT

>g10800.t75 Gene=g10800 Length=152
MSSAAYYPFQCKPTVYPADPFDPNEDAGILRKAMKGFGTDEKAIIEVLARRGIVQRLEIA
SAYKTNFGKDLINDLKSELGGKFEDVILALMTPLPQFYAKELHDAISGIGTDEDAIIEIL
CTLSNYGIRTIAEFYEQLYGNSLESDLKGEIL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g10800.t75 Gene3D G3DSA:1.10.220.10 - 20 92 2.8E-28
13 g10800.t75 Gene3D G3DSA:1.10.220.10 - 94 151 8.8E-19
3 g10800.t75 PANTHER PTHR10502 ANNEXIN 7 150 5.1E-57
4 g10800.t75 PANTHER PTHR10502:SF212 ANNEXIN B9 7 150 5.1E-57
11 g10800.t75 PRINTS PR00196 Annexin family signature 35 57 2.5E-24
6 g10800.t75 PRINTS PR00200 Annexin type IV signature 46 55 7.3E-5
8 g10800.t75 PRINTS PR00200 Annexin type IV signature 57 67 7.3E-5
9 g10800.t75 PRINTS PR00196 Annexin family signature 75 91 2.5E-24
5 g10800.t75 PRINTS PR00200 Annexin type IV signature 85 100 7.3E-5
10 g10800.t75 PRINTS PR00196 Annexin family signature 102 123 2.5E-24
7 g10800.t75 PRINTS PR00200 Annexin type IV signature 127 141 7.3E-5
1 g10800.t75 Pfam PF00191 Annexin 26 90 5.1E-23
2 g10800.t75 Pfam PF00191 Annexin 98 150 2.5E-17
15 g10800.t75 ProSitePatterns PS00223 Annexin repeat signature. 38 90 -
19 g10800.t75 ProSiteProfiles PS51897 Annexin repeat profile. 21 92 26.995
18 g10800.t75 ProSiteProfiles PS51897 Annexin repeat profile. 93 152 20.862
16 g10800.t75 SMART SM00335 annex3 38 90 4.1E-22
17 g10800.t75 SMART SM00335 annex3 110 152 2.2E-8
12 g10800.t75 SUPERFAMILY SSF47874 Annexin 6 150 2.36E-52

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values