Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B9.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10800 g10800.t80 isoform g10800.t80 12051639 12057184
chr_1 g10800 g10800.t80 exon g10800.t80.exon1 12051639 12052051
chr_1 g10800 g10800.t80 TTS g10800.t80 12051653 12051653
chr_1 g10800 g10800.t80 cds g10800.t80.CDS1 12051998 12052051
chr_1 g10800 g10800.t80 exon g10800.t80.exon2 12052686 12052867
chr_1 g10800 g10800.t80 cds g10800.t80.CDS2 12052686 12052867
chr_1 g10800 g10800.t80 exon g10800.t80.exon3 12052960 12053108
chr_1 g10800 g10800.t80 cds g10800.t80.CDS3 12052960 12053108
chr_1 g10800 g10800.t80 exon g10800.t80.exon4 12053171 12053303
chr_1 g10800 g10800.t80 cds g10800.t80.CDS4 12053171 12053303
chr_1 g10800 g10800.t80 exon g10800.t80.exon5 12053380 12053508
chr_1 g10800 g10800.t80 cds g10800.t80.CDS5 12053380 12053508
chr_1 g10800 g10800.t80 exon g10800.t80.exon6 12053572 12053869
chr_1 g10800 g10800.t80 cds g10800.t80.CDS6 12053572 12053869
chr_1 g10800 g10800.t80 exon g10800.t80.exon7 12055388 12055446
chr_1 g10800 g10800.t80 cds g10800.t80.CDS7 12055388 12055417
chr_1 g10800 g10800.t80 exon g10800.t80.exon8 12057142 12057184
chr_1 g10800 g10800.t80 TSS g10800.t80 12057215 12057215

Sequences

>g10800.t80 Gene=g10800 Length=1406
TAAAAACGTAAGTGATCACTTTCAAGTGTAATAAAAGTTAAATAGTCGTATTAATTGTAA
AGAGCAGCGAAAATGAGTTCAGCAGCCTACTATCCATTCCAATGCAAACCAACCGTTTAC
CCTGCCGATCCTTTTGACCCAAATGAAGATGCAGGTATCTTGAGAAAGGCAATGAAAGGA
TTTGGAACTGATGAAAAGGCAATTATTGAAGTGCTTGCTCGTCGTGGAATTGTTCAACGT
CTTGAGATTGCTTCGGCATATAAGACCAACTTTGGCAAGGATTTGATTAATGATTTGAAA
AGTGAACTTGGTGGCAAGTTTGAAGATGTCATTCTTGCTTTGATGACTCCTTTGCCGCAA
TTCTATGCAAAGGAATTGCATGATGCAATTTCCGGCATTGGAACTGACGAAGACGCTATC
ATCGAAATTCTCTGCACACTCTCCAACTATGGCATTCGTACAATTGCAGAATTCTACGAA
CAACTGTATGGAAATTCACTCGAAAGCGACTTGAAGGGAGACACCTCAGGATTCTTTAAG
CGTTTATGCGTATCATTAGTGCAAGGCAATCGCGATGAAAACAATGGTGTTGATCAAGGT
TCTGCTCTTGCTGATGCTACTGCACTTTATGAAGCCGGTGAAGGACAATGGGGCACTGAT
GAGTCAGTTTTCAATCAAATTCTTGTAACCAGATCATACCAACAATTGAGACAAGTCTTT
TTGGAATATGAGGCTATGAGCGGCCACGACATTGAAAAAGCTATCAAGCGTGAATTCTCA
GGAAACGCTGAAAAAGGATTCCTCGCAATCGCCAAGGTTGTCAAATCAAAGGTTGATTTC
TTTGCTGAAAAACTCTACGAGAGCATGAAGGGCTTAGGTACGAATGACAAGACATTGATT
CGTATCATTGTTTCACGCTCAGAAATTGATTTGGGTGACATCAAAGAAGCATTTGAAGCC
AAGTATGGAAAAAGCCTCGAGAGCTGGGTTAAGGGTGACACCTCAGGCGATTATAAAAAA
TGTTTGTTAGCACTTATTGGCGAGTAGAAGCTCATCGCATGAACATTTAAAATCCGATAT
ATGAAAATAATTAGTTATTAAGAGATAACACACATACACAATATTATTGGACAAAAAATG
TTTCTACATTTACACACTATGAACATCATGTACTAAAATAATTTGTTTAAAAAAACTTCC
ATCAGTAATGTTCATTCACAATTTGCTTTTATTATTCGTTGGAAATTTGCAAAACTGTAG
CTGTTAAAATTCACATAAAATATTTTTTTAAAGTTGTTATATTCTTTGCAAGAAAAAAAC
TACATTTTAGGAAAGAACTACATTTAAAAAAGCATTCAAATAAAATGATCGAAATAAAAA
AGAGTAAAAACTAAACTGACAACTTT

>g10800.t80 Gene=g10800 Length=324
MSSAAYYPFQCKPTVYPADPFDPNEDAGILRKAMKGFGTDEKAIIEVLARRGIVQRLEIA
SAYKTNFGKDLINDLKSELGGKFEDVILALMTPLPQFYAKELHDAISGIGTDEDAIIEIL
CTLSNYGIRTIAEFYEQLYGNSLESDLKGDTSGFFKRLCVSLVQGNRDENNGVDQGSALA
DATALYEAGEGQWGTDESVFNQILVTRSYQQLRQVFLEYEAMSGHDIEKAIKREFSGNAE
KGFLAIAKVVKSKVDFFAEKLYESMKGLGTNDKTLIRIIVSRSEIDLGDIKEAFEAKYGK
SLESWVKGDTSGDYKKCLLALIGE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
18 g10800.t80 Coils Coil Coil 322 324 -
17 g10800.t80 Gene3D G3DSA:1.10.220.10 - 20 92 1.3E-27
15 g10800.t80 Gene3D G3DSA:1.10.220.10 - 94 165 6.9E-26
14 g10800.t80 Gene3D G3DSA:1.10.220.10 - 166 252 2.9E-30
16 g10800.t80 Gene3D G3DSA:1.10.220.10 - 254 324 3.9E-29
5 g10800.t80 PANTHER PTHR10502 ANNEXIN 7 322 9.8E-146
6 g10800.t80 PANTHER PTHR10502:SF212 ANNEXIN B9 7 322 9.8E-146
12 g10800.t80 PRINTS PR00196 Annexin family signature 35 57 3.0E-58
7 g10800.t80 PRINTS PR00196 Annexin family signature 75 91 3.0E-58
10 g10800.t80 PRINTS PR00196 Annexin family signature 102 123 3.0E-58
9 g10800.t80 PRINTS PR00196 Annexin family signature 185 211 3.0E-58
11 g10800.t80 PRINTS PR00196 Annexin family signature 265 285 3.0E-58
8 g10800.t80 PRINTS PR00196 Annexin family signature 309 322 3.0E-58
4 g10800.t80 Pfam PF00191 Annexin 26 90 2.3E-22
2 g10800.t80 Pfam PF00191 Annexin 98 162 2.4E-22
3 g10800.t80 Pfam PF00191 Annexin 181 246 1.7E-23
1 g10800.t80 Pfam PF00191 Annexin 256 321 2.1E-25
20 g10800.t80 ProSitePatterns PS00223 Annexin repeat signature. 38 90 -
19 g10800.t80 ProSitePatterns PS00223 Annexin repeat signature. 269 321 -
28 g10800.t80 ProSiteProfiles PS51897 Annexin repeat profile. 21 92 26.995
27 g10800.t80 ProSiteProfiles PS51897 Annexin repeat profile. 93 164 27.041
25 g10800.t80 ProSiteProfiles PS51897 Annexin repeat profile. 176 248 27.356
26 g10800.t80 ProSiteProfiles PS51897 Annexin repeat profile. 252 323 29.939
23 g10800.t80 SMART SM00335 annex3 38 90 4.1E-22
22 g10800.t80 SMART SM00335 annex3 110 162 3.3E-21
24 g10800.t80 SMART SM00335 annex3 194 246 5.4E-20
21 g10800.t80 SMART SM00335 annex3 269 321 8.2E-26
13 g10800.t80 SUPERFAMILY SSF47874 Annexin 6 323 6.68E-123

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values