Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B9.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10800 g10800.t81 isoform g10800.t81 12051639 12057184
chr_1 g10800 g10800.t81 exon g10800.t81.exon1 12051639 12052051
chr_1 g10800 g10800.t81 TTS g10800.t81 12051653 12051653
chr_1 g10800 g10800.t81 cds g10800.t81.CDS1 12051998 12052051
chr_1 g10800 g10800.t81 exon g10800.t81.exon2 12052686 12052867
chr_1 g10800 g10800.t81 cds g10800.t81.CDS2 12052686 12052867
chr_1 g10800 g10800.t81 exon g10800.t81.exon3 12052960 12053108
chr_1 g10800 g10800.t81 cds g10800.t81.CDS3 12052960 12053108
chr_1 g10800 g10800.t81 exon g10800.t81.exon4 12053171 12053303
chr_1 g10800 g10800.t81 cds g10800.t81.CDS4 12053171 12053303
chr_1 g10800 g10800.t81 exon g10800.t81.exon5 12053380 12053508
chr_1 g10800 g10800.t81 cds g10800.t81.CDS5 12053380 12053508
chr_1 g10800 g10800.t81 exon g10800.t81.exon6 12053572 12053869
chr_1 g10800 g10800.t81 cds g10800.t81.CDS6 12053572 12053800
chr_1 g10800 g10800.t81 exon g10800.t81.exon7 12057095 12057184
chr_1 g10800 g10800.t81 TSS g10800.t81 12057215 12057215

Sequences

>g10800.t81 Gene=g10800 Length=1394
TAAAAACGTAAGTGATCACTTTCAAGTGTAATAAAAGTTAAATTTATCTTAAAGTAAGTA
TATAAAAGTGACATTTCATTGTTGTATTTATGCAAACCAACCGTTTACCCTGCCGATCCT
TTTGACCCAAATGAAGATGCAGGTATCTTGAGAAAGGCAATGAAAGGATTTGGAACTGAT
GAAAAGGCAATTATTGAAGTGCTTGCTCGTCGTGGAATTGTTCAACGTCTTGAGATTGCT
TCGGCATATAAGACCAACTTTGGCAAGGATTTGATTAATGATTTGAAAAGTGAACTTGGT
GGCAAGTTTGAAGATGTCATTCTTGCTTTGATGACTCCTTTGCCGCAATTCTATGCAAAG
GAATTGCATGATGCAATTTCCGGCATTGGAACTGACGAAGACGCTATCATCGAAATTCTC
TGCACACTCTCCAACTATGGCATTCGTACAATTGCAGAATTCTACGAACAACTGTATGGA
AATTCACTCGAAAGCGACTTGAAGGGAGACACCTCAGGATTCTTTAAGCGTTTATGCGTA
TCATTAGTGCAAGGCAATCGCGATGAAAACAATGGTGTTGATCAAGGTTCTGCTCTTGCT
GATGCTACTGCACTTTATGAAGCCGGTGAAGGACAATGGGGCACTGATGAGTCAGTTTTC
AATCAAATTCTTGTAACCAGATCATACCAACAATTGAGACAAGTCTTTTTGGAATATGAG
GCTATGAGCGGCCACGACATTGAAAAAGCTATCAAGCGTGAATTCTCAGGAAACGCTGAA
AAAGGATTCCTCGCAATCGCCAAGGTTGTCAAATCAAAGGTTGATTTCTTTGCTGAAAAA
CTCTACGAGAGCATGAAGGGCTTAGGTACGAATGACAAGACATTGATTCGTATCATTGTT
TCACGCTCAGAAATTGATTTGGGTGACATCAAAGAAGCATTTGAAGCCAAGTATGGAAAA
AGCCTCGAGAGCTGGGTTAAGGGTGACACCTCAGGCGATTATAAAAAATGTTTGTTAGCA
CTTATTGGCGAGTAGAAGCTCATCGCATGAACATTTAAAATCCGATATATGAAAATAATT
AGTTATTAAGAGATAACACACATACACAATATTATTGGACAAAAAATGTTTCTACATTTA
CACACTATGAACATCATGTACTAAAATAATTTGTTTAAAAAAACTTCCATCAGTAATGTT
CATTCACAATTTGCTTTTATTATTCGTTGGAAATTTGCAAAACTGTAGCTGTTAAAATTC
ACATAAAATATTTTTTTAAAGTTGTTATATTCTTTGCAAGAAAAAAACTACATTTTAGGA
AAGAACTACATTTAAAAAAGCATTCAAATAAAATGATCGAAATAAAAAAGAGTAAAAACT
AAACTGACAACTTT

>g10800.t81 Gene=g10800 Length=291
MKGFGTDEKAIIEVLARRGIVQRLEIASAYKTNFGKDLINDLKSELGGKFEDVILALMTP
LPQFYAKELHDAISGIGTDEDAIIEILCTLSNYGIRTIAEFYEQLYGNSLESDLKGDTSG
FFKRLCVSLVQGNRDENNGVDQGSALADATALYEAGEGQWGTDESVFNQILVTRSYQQLR
QVFLEYEAMSGHDIEKAIKREFSGNAEKGFLAIAKVVKSKVDFFAEKLYESMKGLGTNDK
TLIRIIVSRSEIDLGDIKEAFEAKYGKSLESWVKGDTSGDYKKCLLALIGE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g10800.t81 Gene3D G3DSA:1.10.220.10 - 1 59 2.1E-21
16 g10800.t81 Gene3D G3DSA:1.10.220.10 - 61 132 5.7E-26
15 g10800.t81 Gene3D G3DSA:1.10.220.10 - 133 219 2.3E-30
17 g10800.t81 Gene3D G3DSA:1.10.220.10 - 221 291 3.2E-29
5 g10800.t81 PANTHER PTHR10502 ANNEXIN 1 289 8.4E-134
6 g10800.t81 PANTHER PTHR10502:SF212 ANNEXIN B9 1 289 8.4E-134
11 g10800.t81 PRINTS PR00196 Annexin family signature 2 24 1.8E-58
10 g10800.t81 PRINTS PR00196 Annexin family signature 42 58 1.8E-58
12 g10800.t81 PRINTS PR00196 Annexin family signature 69 90 1.8E-58
8 g10800.t81 PRINTS PR00196 Annexin family signature 152 178 1.8E-58
9 g10800.t81 PRINTS PR00196 Annexin family signature 232 252 1.8E-58
7 g10800.t81 PRINTS PR00196 Annexin family signature 276 289 1.8E-58
4 g10800.t81 Pfam PF00191 Annexin 1 57 2.0E-18
1 g10800.t81 Pfam PF00191 Annexin 65 129 2.0E-22
3 g10800.t81 Pfam PF00191 Annexin 148 213 1.4E-23
2 g10800.t81 Pfam PF00191 Annexin 223 288 1.8E-25
18 g10800.t81 ProSitePatterns PS00223 Annexin repeat signature. 5 57 -
19 g10800.t81 ProSitePatterns PS00223 Annexin repeat signature. 236 288 -
25 g10800.t81 ProSiteProfiles PS51897 Annexin repeat profile. 1 59 23.568
24 g10800.t81 ProSiteProfiles PS51897 Annexin repeat profile. 60 131 27.041
27 g10800.t81 ProSiteProfiles PS51897 Annexin repeat profile. 143 215 27.356
26 g10800.t81 ProSiteProfiles PS51897 Annexin repeat profile. 219 290 29.939
20 g10800.t81 SMART SM00335 annex3 5 57 4.1E-22
22 g10800.t81 SMART SM00335 annex3 77 129 3.3E-21
21 g10800.t81 SMART SM00335 annex3 161 213 5.4E-20
23 g10800.t81 SMART SM00335 annex3 236 288 8.2E-26
13 g10800.t81 SUPERFAMILY SSF47874 Annexin 1 290 1.96E-114

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values