Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B9.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10800 g10800.t86 isoform g10800.t86 12051639 12057223
chr_1 g10800 g10800.t86 exon g10800.t86.exon1 12051639 12052051
chr_1 g10800 g10800.t86 TTS g10800.t86 12051653 12051653
chr_1 g10800 g10800.t86 exon g10800.t86.exon2 12052686 12052867
chr_1 g10800 g10800.t86 exon g10800.t86.exon3 12052960 12053108
chr_1 g10800 g10800.t86 exon g10800.t86.exon4 12053171 12053303
chr_1 g10800 g10800.t86 cds g10800.t86.CDS1 12053274 12053303
chr_1 g10800 g10800.t86 exon g10800.t86.exon5 12053387 12053508
chr_1 g10800 g10800.t86 cds g10800.t86.CDS2 12053387 12053508
chr_1 g10800 g10800.t86 exon g10800.t86.exon6 12053572 12053869
chr_1 g10800 g10800.t86 cds g10800.t86.CDS3 12053572 12053869
chr_1 g10800 g10800.t86 exon g10800.t86.exon7 12055388 12055446
chr_1 g10800 g10800.t86 cds g10800.t86.CDS4 12055388 12055417
chr_1 g10800 g10800.t86 exon g10800.t86.exon8 12057132 12057223
chr_1 g10800 g10800.t86 TSS g10800.t86 12057215 12057215

Sequences

>g10800.t86 Gene=g10800 Length=1448
ATTCTCTCAGTTTCAATTTGAACTTCGAGTGAGTAAGATTAAAAACGTAAGTGATCACTT
TCAAGTGTAATAAAAGTTAAATTTATCTTAAAAGTCGTATTAATTGTAAAGAGCAGCGAA
AATGAGTTCAGCAGCCTACTATCCATTCCAATGCAAACCAACCGTTTACCCTGCCGATCC
TTTTGACCCAAATGAAGATGCAGGTATCTTGAGAAAGGCAATGAAAGGATTTGGAACTGA
TGAAAAGGCAATTATTGAAGTGCTTGCTCGTCGTGGAATTGTTCAACGTCTTGAGATTGC
TTCGGCATATAAGACCAACTTTGGCAAGGATTTGATTAATGATTTGAAAAGTGAACTTGG
TGGCAAGTTTGAAGATGTCATTCTTGCTTTGATGACTCCTTTGCCGCAATTCTATGCAAA
GGAATTGCATGATGCAATTTCCGGCATTGGAACTGACGAAGACGCTATCATCGAAATTCT
CTGCACACTCTCCAACTATGGCATTCGTACAATTGCAGAATTCTACGAACAACTGTATGG
AAATTCACTCGAAAGCGACTTGAAGGGAGACGATTCTTTAAGCGTTTATGCGTATCATTA
GTGCAAGGCAATCGCGATGAAAACAATGGTGTTGATCAAGGTTCTGCTCTTGCTGATGCT
ACTGCACTTTATGAAGCCGGTGAAGGACAATGGGGCACTGATGAGTCAGTTTTCAATCAA
ATTCTTGTAACCAGATCATACCAACAATTGAGACAAGTCTTTTTGGAATATGAGGCTATG
AGCGGCCACGACATTGAAAAAGCTATCAAGCGTGAATTCTCAGGAAACGCTGAAAAAGGA
TTCCTCGCAATCGCCAAGGTTGTCAAATCAAAGGTTGATTTCTTTGCTGAAAAACTCTAC
GAGAGCATGAAGGGCTTAGGTACGAATGACAAGACATTGATTCGTATCATTGTTTCACGC
TCAGAAATTGATTTGGGTGACATCAAAGAAGCATTTGAAGCCAAGTATGGAAAAAGCCTC
GAGAGCTGGGTTAAGGGTGACACCTCAGGCGATTATAAAAAATGTTTGTTAGCACTTATT
GGCGAGTAGAAGCTCATCGCATGAACATTTAAAATCCGATATATGAAAATAATTAGTTAT
TAAGAGATAACACACATACACAATATTATTGGACAAAAAATGTTTCTACATTTACACACT
ATGAACATCATGTACTAAAATAATTTGTTTAAAAAAACTTCCATCAGTAATGTTCATTCA
CAATTTGCTTTTATTATTCGTTGGAAATTTGCAAAACTGTAGCTGTTAAAATTCACATAA
AATATTTTTTTAAAGTTGTTATATTCTTTGCAAGAAAAAAACTACATTTTAGGAAAGAAC
TACATTTAAAAAAGCATTCAAATAAAATGATCGAAATAAAAAAGAGTAAAAACTAAACTG
ACAACTTT

>g10800.t86 Gene=g10800 Length=159
MSSAAYYPFQCKPTVYPADPFDPNEDAGILRKAMKGFGTDEKAIIEVLARRGIVQRLEIA
SAYKTNFGKDLINDLKSELGGKFEDVILALMTPLPQFYAKELHDAISGIGTDEDAIIEIL
CTLSNYGIRTIAEFYEQLYGNSLESDLKGDDSLSVYAYH

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g10800.t86 Gene3D G3DSA:1.10.220.10 - 20 92 3.2E-28
14 g10800.t86 Gene3D G3DSA:1.10.220.10 - 94 155 8.4E-19
3 g10800.t86 PANTHER PTHR10502 ANNEXIN 7 151 4.0E-57
4 g10800.t86 PANTHER PTHR10502:SF212 ANNEXIN B9 7 151 4.0E-57
11 g10800.t86 PRINTS PR00196 Annexin family signature 35 57 2.7E-24
6 g10800.t86 PRINTS PR00200 Annexin type IV signature 46 55 8.2E-5
8 g10800.t86 PRINTS PR00200 Annexin type IV signature 57 67 8.2E-5
9 g10800.t86 PRINTS PR00196 Annexin family signature 75 91 2.7E-24
5 g10800.t86 PRINTS PR00200 Annexin type IV signature 85 100 8.2E-5
10 g10800.t86 PRINTS PR00196 Annexin family signature 102 123 2.7E-24
7 g10800.t86 PRINTS PR00200 Annexin type IV signature 127 141 8.2E-5
2 g10800.t86 Pfam PF00191 Annexin 26 90 5.7E-23
1 g10800.t86 Pfam PF00191 Annexin 98 152 1.9E-17
15 g10800.t86 ProSitePatterns PS00223 Annexin repeat signature. 38 90 -
19 g10800.t86 ProSiteProfiles PS51897 Annexin repeat profile. 21 92 26.995
18 g10800.t86 ProSiteProfiles PS51897 Annexin repeat profile. 93 159 20.271
16 g10800.t86 SMART SM00335 annex3 38 90 4.1E-22
17 g10800.t86 SMART SM00335 annex3 110 155 6.7E-8
12 g10800.t86 SUPERFAMILY SSF47874 Annexin 6 152 1.23E-52

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values