Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B9.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10800 g10800.t89 isoform g10800.t89 12051639 12057223
chr_1 g10800 g10800.t89 exon g10800.t89.exon1 12051639 12052051
chr_1 g10800 g10800.t89 TTS g10800.t89 12051653 12051653
chr_1 g10800 g10800.t89 exon g10800.t89.exon2 12052686 12052817
chr_1 g10800 g10800.t89 cds g10800.t89.CDS1 12052792 12052817
chr_1 g10800 g10800.t89 exon g10800.t89.exon3 12052960 12053108
chr_1 g10800 g10800.t89 cds g10800.t89.CDS2 12052960 12053108
chr_1 g10800 g10800.t89 exon g10800.t89.exon4 12053171 12053303
chr_1 g10800 g10800.t89 cds g10800.t89.CDS3 12053171 12053303
chr_1 g10800 g10800.t89 exon g10800.t89.exon5 12053380 12053508
chr_1 g10800 g10800.t89 cds g10800.t89.CDS4 12053380 12053508
chr_1 g10800 g10800.t89 exon g10800.t89.exon6 12053572 12053869
chr_1 g10800 g10800.t89 cds g10800.t89.CDS5 12053572 12053869
chr_1 g10800 g10800.t89 exon g10800.t89.exon7 12055388 12055446
chr_1 g10800 g10800.t89 cds g10800.t89.CDS6 12055388 12055417
chr_1 g10800 g10800.t89 exon g10800.t89.exon8 12057132 12057223
chr_1 g10800 g10800.t89 TSS g10800.t89 12057215 12057215

Sequences

>g10800.t89 Gene=g10800 Length=1405
ATTCTCTCAGTTTCAATTTGAACTTCGAGTGAGTAAGATTAAAAACGTAAGTGATCACTT
TCAAGTGTAATAAAAGTTAAATTTATCTTAAAAGTCGTATTAATTGTAAAGAGCAGCGAA
AATGAGTTCAGCAGCCTACTATCCATTCCAATGCAAACCAACCGTTTACCCTGCCGATCC
TTTTGACCCAAATGAAGATGCAGGTATCTTGAGAAAGGCAATGAAAGGATTTGGAACTGA
TGAAAAGGCAATTATTGAAGTGCTTGCTCGTCGTGGAATTGTTCAACGTCTTGAGATTGC
TTCGGCATATAAGACCAACTTTGGCAAGGATTTGATTAATGATTTGAAAAGTGAACTTGG
TGGCAAGTTTGAAGATGTCATTCTTGCTTTGATGACTCCTTTGCCGCAATTCTATGCAAA
GGAATTGCATGATGCAATTTCCGGCATTGGAACTGACGAAGACGCTATCATCGAAATTCT
CTGCACACTCTCCAACTATGGCATTCGTACAATTGCAGAATTCTACGAACAACTGTATGG
AAATTCACTCGAAAGCGACTTGAAGGGAGACACCTCAGGATTCTTTAAGCGTTTATGCGT
ATCATTAGTGCAAGGCAATCGCGATGAAAACAATGGTGTTGATCAAGGTTCTGCTCTTGC
TGATGCTACTGCACTTTATGAAGCCGGTGAAGGACAATGGGGCACTGATGAGTCAGTTTT
CAATCAAATTCTTGTAACCAGATCATACCAACAATTGAGACAAGTCTTTTTGGAATATGA
GGCTATGAGCGGCCACGACATTGAAAAAGCTATCAAGCGTGAATTCTCAGGAAACGCTGA
AAAAGGATTCCTCGCAATCGAGCATGAAGGGCTTAGGTACGAATGACAAGACATTGATTC
GTATCATTGTTTCACGCTCAGAAATTGATTTGGGTGACATCAAAGAAGCATTTGAAGCCA
AGTATGGAAAAAGCCTCGAGAGCTGGGTTAAGGGTGACACCTCAGGCGATTATAAAAAAT
GTTTGTTAGCACTTATTGGCGAGTAGAAGCTCATCGCATGAACATTTAAAATCCGATATA
TGAAAATAATTAGTTATTAAGAGATAACACACATACACAATATTATTGGACAAAAAATGT
TTCTACATTTACACACTATGAACATCATGTACTAAAATAATTTGTTTAAAAAAACTTCCA
TCAGTAATGTTCATTCACAATTTGCTTTTATTATTCGTTGGAAATTTGCAAAACTGTAGC
TGTTAAAATTCACATAAAATATTTTTTTAAAGTTGTTATATTCTTTGCAAGAAAAAAACT
ACATTTTAGGAAAGAACTACATTTAAAAAAGCATTCAAATAAAATGATCGAAATAAAAAA
GAGTAAAAACTAAACTGACAACTTT

>g10800.t89 Gene=g10800 Length=254
MSSAAYYPFQCKPTVYPADPFDPNEDAGILRKAMKGFGTDEKAIIEVLARRGIVQRLEIA
SAYKTNFGKDLINDLKSELGGKFEDVILALMTPLPQFYAKELHDAISGIGTDEDAIIEIL
CTLSNYGIRTIAEFYEQLYGNSLESDLKGDTSGFFKRLCVSLVQGNRDENNGVDQGSALA
DATALYEAGEGQWGTDESVFNQILVTRSYQQLRQVFLEYEAMSGHDIEKAIKREFSGNAE
KGFLAIEHEGLRYE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g10800.t89 Gene3D G3DSA:1.10.220.10 - 20 92 8.7E-28
11 g10800.t89 Gene3D G3DSA:1.10.220.10 - 94 166 4.5E-26
13 g10800.t89 Gene3D G3DSA:1.10.220.10 - 167 248 3.0E-29
4 g10800.t89 PANTHER PTHR10502 ANNEXIN 7 246 2.6E-100
5 g10800.t89 PANTHER PTHR10502:SF212 ANNEXIN B9 7 246 2.6E-100
9 g10800.t89 PRINTS PR00196 Annexin family signature 35 57 6.4E-38
6 g10800.t89 PRINTS PR00196 Annexin family signature 75 91 6.4E-38
8 g10800.t89 PRINTS PR00196 Annexin family signature 102 123 6.4E-38
7 g10800.t89 PRINTS PR00196 Annexin family signature 185 211 6.4E-38
3 g10800.t89 Pfam PF00191 Annexin 26 90 1.5E-22
1 g10800.t89 Pfam PF00191 Annexin 98 162 1.6E-22
2 g10800.t89 Pfam PF00191 Annexin 181 246 1.1E-23
14 g10800.t89 ProSitePatterns PS00223 Annexin repeat signature. 38 90 -
15 g10800.t89 ProSitePatterns PS00223 Annexin repeat signature. 194 246 -
21 g10800.t89 ProSiteProfiles PS51897 Annexin repeat profile. 21 92 26.995
20 g10800.t89 ProSiteProfiles PS51897 Annexin repeat profile. 93 164 27.041
19 g10800.t89 ProSiteProfiles PS51897 Annexin repeat profile. 176 248 25.393
17 g10800.t89 SMART SM00335 annex3 38 90 4.1E-22
16 g10800.t89 SMART SM00335 annex3 110 162 3.3E-21
18 g10800.t89 SMART SM00335 annex3 194 246 5.4E-20
10 g10800.t89 SUPERFAMILY SSF47874 Annexin 6 246 3.14E-90

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values