Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B9.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10800 g10800.t90 isoform g10800.t90 12051639 12057223
chr_1 g10800 g10800.t90 exon g10800.t90.exon1 12051639 12052051
chr_1 g10800 g10800.t90 TTS g10800.t90 12051653 12051653
chr_1 g10800 g10800.t90 cds g10800.t90.CDS1 12051998 12052051
chr_1 g10800 g10800.t90 exon g10800.t90.exon2 12052686 12052867
chr_1 g10800 g10800.t90 cds g10800.t90.CDS2 12052686 12052867
chr_1 g10800 g10800.t90 exon g10800.t90.exon3 12052960 12053108
chr_1 g10800 g10800.t90 cds g10800.t90.CDS3 12052960 12053108
chr_1 g10800 g10800.t90 exon g10800.t90.exon4 12053171 12053303
chr_1 g10800 g10800.t90 cds g10800.t90.CDS4 12053171 12053303
chr_1 g10800 g10800.t90 exon g10800.t90.exon5 12053395 12053508
chr_1 g10800 g10800.t90 cds g10800.t90.CDS5 12053395 12053508
chr_1 g10800 g10800.t90 exon g10800.t90.exon6 12053572 12053869
chr_1 g10800 g10800.t90 cds g10800.t90.CDS6 12053572 12053869
chr_1 g10800 g10800.t90 exon g10800.t90.exon7 12055388 12055446
chr_1 g10800 g10800.t90 cds g10800.t90.CDS7 12055388 12055417
chr_1 g10800 g10800.t90 exon g10800.t90.exon8 12057132 12057223
chr_1 g10800 g10800.t90 TSS g10800.t90 12057215 12057215

Sequences

>g10800.t90 Gene=g10800 Length=1440
ATTCTCTCAGTTTCAATTTGAACTTCGAGTGAGTAAGATTAAAAACGTAAGTGATCACTT
TCAAGTGTAATAAAAGTTAAATTTATCTTAAAAGTCGTATTAATTGTAAAGAGCAGCGAA
AATGAGTTCAGCAGCCTACTATCCATTCCAATGCAAACCAACCGTTTACCCTGCCGATCC
TTTTGACCCAAATGAAGATGCAGGTATCTTGAGAAAGGCAATGAAAGGATTTGGAACTGA
TGAAAAGGCAATTATTGAAGTGCTTGCTCGTCGTGGAATTGTTCAACGTCTTGAGATTGC
TTCGGCATATAAGACCAACTTTGGCAAGGATTTGATTAATGATTTGAAAAGTGAACTTGG
TGGCAAGTTTGAAGATGTCATTCTTGCTTTGATGACTCCTTTGCCGCAATTCTATGCAAA
GGAATTGCATGATGCAATTTCCGGCATTGGAACTGACGAAGACGCTATCATCGAAATTCT
CTGCACACTCTCCAACTATGGCATTCGTACAATTGCAGAATTCTACGAACAACTGTATGG
AAATTCACTCGAAAGCGACTTGAGATTCTTTAAGCGTTTATGCGTATCATTAGTGCAAGG
CAATCGCGATGAAAACAATGGTGTTGATCAAGGTTCTGCTCTTGCTGATGCTACTGCACT
TTATGAAGCCGGTGAAGGACAATGGGGCACTGATGAGTCAGTTTTCAATCAAATTCTTGT
AACCAGATCATACCAACAATTGAGACAAGTCTTTTTGGAATATGAGGCTATGAGCGGCCA
CGACATTGAAAAAGCTATCAAGCGTGAATTCTCAGGAAACGCTGAAAAAGGATTCCTCGC
AATCGCCAAGGTTGTCAAATCAAAGGTTGATTTCTTTGCTGAAAAACTCTACGAGAGCAT
GAAGGGCTTAGGTACGAATGACAAGACATTGATTCGTATCATTGTTTCACGCTCAGAAAT
TGATTTGGGTGACATCAAAGAAGCATTTGAAGCCAAGTATGGAAAAAGCCTCGAGAGCTG
GGTTAAGGGTGACACCTCAGGCGATTATAAAAAATGTTTGTTAGCACTTATTGGCGAGTA
GAAGCTCATCGCATGAACATTTAAAATCCGATATATGAAAATAATTAGTTATTAAGAGAT
AACACACATACACAATATTATTGGACAAAAAATGTTTCTACATTTACACACTATGAACAT
CATGTACTAAAATAATTTGTTTAAAAAAACTTCCATCAGTAATGTTCATTCACAATTTGC
TTTTATTATTCGTTGGAAATTTGCAAAACTGTAGCTGTTAAAATTCACATAAAATATTTT
TTTAAAGTTGTTATATTCTTTGCAAGAAAAAAACTACATTTTAGGAAAGAACTACATTTA
AAAAAGCATTCAAATAAAATGATCGAAATAAAAAAGAGTAAAAACTAAACTGACAACTTT

>g10800.t90 Gene=g10800 Length=319
MSSAAYYPFQCKPTVYPADPFDPNEDAGILRKAMKGFGTDEKAIIEVLARRGIVQRLEIA
SAYKTNFGKDLINDLKSELGGKFEDVILALMTPLPQFYAKELHDAISGIGTDEDAIIEIL
CTLSNYGIRTIAEFYEQLYGNSLESDLRFFKRLCVSLVQGNRDENNGVDQGSALADATAL
YEAGEGQWGTDESVFNQILVTRSYQQLRQVFLEYEAMSGHDIEKAIKREFSGNAEKGFLA
IAKVVKSKVDFFAEKLYESMKGLGTNDKTLIRIIVSRSEIDLGDIKEAFEAKYGKSLESW
VKGDTSGDYKKCLLALIGE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g10800.t90 Gene3D G3DSA:1.10.220.10 - 20 92 1.3E-27
17 g10800.t90 Gene3D G3DSA:1.10.220.10 - 95 161 7.6E-19
15 g10800.t90 Gene3D G3DSA:1.10.220.10 - 162 247 2.8E-30
14 g10800.t90 Gene3D G3DSA:1.10.220.10 - 249 319 3.8E-29
5 g10800.t90 PANTHER PTHR10502 ANNEXIN 7 317 1.2E-142
6 g10800.t90 PANTHER PTHR10502:SF212 ANNEXIN B9 7 317 1.2E-142
12 g10800.t90 PRINTS PR00196 Annexin family signature 35 57 2.8E-58
7 g10800.t90 PRINTS PR00196 Annexin family signature 75 91 2.8E-58
9 g10800.t90 PRINTS PR00196 Annexin family signature 102 123 2.8E-58
11 g10800.t90 PRINTS PR00196 Annexin family signature 180 206 2.8E-58
8 g10800.t90 PRINTS PR00196 Annexin family signature 260 280 2.8E-58
10 g10800.t90 PRINTS PR00196 Annexin family signature 304 317 2.8E-58
3 g10800.t90 Pfam PF00191 Annexin 26 90 2.2E-22
2 g10800.t90 Pfam PF00191 Annexin 98 147 2.6E-15
1 g10800.t90 Pfam PF00191 Annexin 176 241 1.6E-23
4 g10800.t90 Pfam PF00191 Annexin 251 316 2.1E-25
18 g10800.t90 ProSitePatterns PS00223 Annexin repeat signature. 38 90 -
19 g10800.t90 ProSitePatterns PS00223 Annexin repeat signature. 264 316 -
27 g10800.t90 ProSiteProfiles PS51897 Annexin repeat profile. 21 92 26.995
25 g10800.t90 ProSiteProfiles PS51897 Annexin repeat profile. 93 148 13.785
26 g10800.t90 ProSiteProfiles PS51897 Annexin repeat profile. 171 243 27.356
24 g10800.t90 ProSiteProfiles PS51897 Annexin repeat profile. 247 318 29.939
20 g10800.t90 SMART SM00335 annex3 38 90 4.1E-22
23 g10800.t90 SMART SM00335 annex3 110 157 8.8E-11
22 g10800.t90 SMART SM00335 annex3 189 241 5.4E-20
21 g10800.t90 SMART SM00335 annex3 264 316 8.2E-26
13 g10800.t90 SUPERFAMILY SSF47874 Annexin 6 318 2.88E-117

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed