Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B9.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10800 g10800.t91 isoform g10800.t91 12051639 12057223
chr_1 g10800 g10800.t91 exon g10800.t91.exon1 12051639 12052051
chr_1 g10800 g10800.t91 TTS g10800.t91 12051653 12051653
chr_1 g10800 g10800.t91 exon g10800.t91.exon2 12052686 12052867
chr_1 g10800 g10800.t91 exon g10800.t91.exon3 12052960 12053108
chr_1 g10800 g10800.t91 cds g10800.t91.CDS1 12053083 12053108
chr_1 g10800 g10800.t91 exon g10800.t91.exon4 12053171 12053273
chr_1 g10800 g10800.t91 cds g10800.t91.CDS2 12053171 12053273
chr_1 g10800 g10800.t91 exon g10800.t91.exon5 12053339 12053508
chr_1 g10800 g10800.t91 cds g10800.t91.CDS3 12053339 12053508
chr_1 g10800 g10800.t91 exon g10800.t91.exon6 12053572 12053869
chr_1 g10800 g10800.t91 cds g10800.t91.CDS4 12053572 12053869
chr_1 g10800 g10800.t91 exon g10800.t91.exon7 12055388 12055446
chr_1 g10800 g10800.t91 cds g10800.t91.CDS5 12055388 12055417
chr_1 g10800 g10800.t91 exon g10800.t91.exon8 12057132 12057223
chr_1 g10800 g10800.t91 TSS g10800.t91 12057215 12057215

Sequences

>g10800.t91 Gene=g10800 Length=1466
ATTCTCTCAGTTTCAATTTGAACTTCGAGTGAGTAAGATTAAAAACGTAAGTGATCACTT
TCAAGTGTAATAAAAGTTAAATTTATCTTAAAAGTCGTATTAATTGTAAAGAGCAGCGAA
AATGAGTTCAGCAGCCTACTATCCATTCCAATGCAAACCAACCGTTTACCCTGCCGATCC
TTTTGACCCAAATGAAGATGCAGGTATCTTGAGAAAGGCAATGAAAGGATTTGGAACTGA
TGAAAAGGCAATTATTGAAGTGCTTGCTCGTCGTGGAATTGTTCAACGTCTTGAGATTGC
TTCGGCATATAAGACCAACTTTGGCAAGGATTTGATTAATGATTTGAAAAGTGAACTTGG
TGGCAAGTTTGAAGATGTCATTCTTGCTTTGATGACTCCTTTGCCGCAATTCTATGCAAA
GGAATTGCATGATGCAATTTCCGGCATTGGAACTGACGAAGACGCTATCATCGAAATTCT
CTGCACACTCTCCAACTATGGCATTCGTACAATTGCAGAATTCTACGAACAACTGTATGG
AAATTCACTCGAAAGCGACTTGAAGGGAGACACCTCAGGTTTGTTGATTATGGCATTCAT
GAGTCATCGAATAGTAACGTGCAAGGCAATCGCGATGAAAACAATGGTGTTGATCAAGGT
TCTGCTCTTGCTGATGCTACTGCACTTTATGAAGCCGGTGAAGGACAATGGGGCACTGAT
GAGTCAGTTTTCAATCAAATTCTTGTAACCAGATCATACCAACAATTGAGACAAGTCTTT
TTGGAATATGAGGCTATGAGCGGCCACGACATTGAAAAAGCTATCAAGCGTGAATTCTCA
GGAAACGCTGAAAAAGGATTCCTCGCAATCGCCAAGGTTGTCAAATCAAAGGTTGATTTC
TTTGCTGAAAAACTCTACGAGAGCATGAAGGGCTTAGGTACGAATGACAAGACATTGATT
CGTATCATTGTTTCACGCTCAGAAATTGATTTGGGTGACATCAAAGAAGCATTTGAAGCC
AAGTATGGAAAAAGCCTCGAGAGCTGGGTTAAGGGTGACACCTCAGGCGATTATAAAAAA
TGTTTGTTAGCACTTATTGGCGAGTAGAAGCTCATCGCATGAACATTTAAAATCCGATAT
ATGAAAATAATTAGTTATTAAGAGATAACACACATACACAATATTATTGGACAAAAAATG
TTTCTACATTTACACACTATGAACATCATGTACTAAAATAATTTGTTTAAAAAAACTTCC
ATCAGTAATGTTCATTCACAATTTGCTTTTATTATTCGTTGGAAATTTGCAAAACTGTAG
CTGTTAAAATTCACATAAAATATTTTTTTAAAGTTGTTATATTCTTTGCAAGAAAAAAAC
TACATTTTAGGAAAGAACTACATTTAAAAAAGCATTCAAATAAAATGATCGAAATAAAAA
AGAGTAAAAACTAAACTGACAACTTT

>g10800.t91 Gene=g10800 Length=208
MSSAAYYPFQCKPTVYPADPFDPNEDAGILRKAMKGFGTDEKAIIEVLARRGIVQRLEIA
SAYKTNFGKDLINDLKSELGGKFEDVILALMTPLPQFYAKELHDAISGIGTDEDAIIEIL
CTLSNYGIRTIAEFYEQLYGNSLESDLKGDTSGLLIMAFMSHRIVTCKAIAMKTMVLIKV
LLLLMLLHFMKPVKDNGALMSQFSIKFL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g10800.t91 Gene3D G3DSA:1.10.220.10 - 20 92 5.8E-28
9 g10800.t91 Gene3D G3DSA:1.10.220.10 - 94 162 2.0E-21
3 g10800.t91 PANTHER PTHR10502 ANNEXIN 7 163 1.3E-58
4 g10800.t91 PANTHER PTHR10502:SF212 ANNEXIN B9 7 163 1.3E-58
7 g10800.t91 PRINTS PR00196 Annexin family signature 35 57 4.9E-24
5 g10800.t91 PRINTS PR00196 Annexin family signature 75 91 4.9E-24
6 g10800.t91 PRINTS PR00196 Annexin family signature 102 123 4.9E-24
1 g10800.t91 Pfam PF00191 Annexin 26 90 1.0E-22
2 g10800.t91 Pfam PF00191 Annexin 98 153 2.2E-19
11 g10800.t91 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 169 -
13 g10800.t91 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 170 190 -
12 g10800.t91 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 191 208 -
15 g10800.t91 ProSitePatterns PS00223 Annexin repeat signature. 38 90 -
19 g10800.t91 ProSiteProfiles PS51897 Annexin repeat profile. 21 92 26.995
18 g10800.t91 ProSiteProfiles PS51897 Annexin repeat profile. 93 165 20.348
16 g10800.t91 SMART SM00335 annex3 38 90 4.1E-22
17 g10800.t91 SMART SM00335 annex3 110 157 5.5E-13
8 g10800.t91 SUPERFAMILY SSF47874 Annexin 6 155 3.53E-54
14 g10800.t91 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 169 190 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values