Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B9.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10800 g10800.t92 isoform g10800.t92 12051639 12057223
chr_1 g10800 g10800.t92 exon g10800.t92.exon1 12051639 12052051
chr_1 g10800 g10800.t92 TTS g10800.t92 12051653 12051653
chr_1 g10800 g10800.t92 cds g10800.t92.CDS1 12051998 12052051
chr_1 g10800 g10800.t92 exon g10800.t92.exon2 12052686 12052867
chr_1 g10800 g10800.t92 cds g10800.t92.CDS2 12052686 12052867
chr_1 g10800 g10800.t92 exon g10800.t92.exon3 12052960 12053108
chr_1 g10800 g10800.t92 cds g10800.t92.CDS3 12052960 12053108
chr_1 g10800 g10800.t92 exon g10800.t92.exon4 12053171 12053303
chr_1 g10800 g10800.t92 cds g10800.t92.CDS4 12053171 12053303
chr_1 g10800 g10800.t92 exon g10800.t92.exon5 12053380 12053439
chr_1 g10800 g10800.t92 cds g10800.t92.CDS5 12053380 12053439
chr_1 g10800 g10800.t92 exon g10800.t92.exon6 12053572 12053869
chr_1 g10800 g10800.t92 cds g10800.t92.CDS6 12053572 12053869
chr_1 g10800 g10800.t92 exon g10800.t92.exon7 12055388 12055446
chr_1 g10800 g10800.t92 cds g10800.t92.CDS7 12055388 12055417
chr_1 g10800 g10800.t92 exon g10800.t92.exon8 12057132 12057223
chr_1 g10800 g10800.t92 TSS g10800.t92 12057215 12057215

Sequences

>g10800.t92 Gene=g10800 Length=1386
ATTCTCTCAGTTTCAATTTGAACTTCGAGTGAGTAAGATTAAAAACGTAAGTGATCACTT
TCAAGTGTAATAAAAGTTAAATTTATCTTAAAAGTCGTATTAATTGTAAAGAGCAGCGAA
AATGAGTTCAGCAGCCTACTATCCATTCCAATGCAAACCAACCGTTTACCCTGCCGATCC
TTTTGACCCAAATGAAGATGCAGGTATCTTGAGAAAGGCAATGAAAGGATTTGGAACTGA
TGAAAAGGCAATTATTGAAGTGCTTGCTCGTCGTGGAATTGTTCAACGTCTTGAGATTGC
TTCGGCATATAAGACCAACTTTGGCAAGGATTTGATTAATGATTTGAAAAGTGAACTTGG
TGGCAAGTTTGAAGATGTCATTCTTGCTTTGATGACTCCTTTGCCGCAATTCTATGCAAA
GGAATTGCATGATGCAATTTCCGGCATTGAATTCTACGAACAACTGTATGGAAATTCACT
CGAAAGCGACTTGAAGGGAGACACCTCAGGATTCTTTAAGCGTTTATGCGTATCATTAGT
GCAAGGCAATCGCGATGAAAACAATGGTGTTGATCAAGGTTCTGCTCTTGCTGATGCTAC
TGCACTTTATGAAGCCGGTGAAGGACAATGGGGCACTGATGAGTCAGTTTTCAATCAAAT
TCTTGTAACCAGATCATACCAACAATTGAGACAAGTCTTTTTGGAATATGAGGCTATGAG
CGGCCACGACATTGAAAAAGCTATCAAGCGTGAATTCTCAGGAAACGCTGAAAAAGGATT
CCTCGCAATCGCCAAGGTTGTCAAATCAAAGGTTGATTTCTTTGCTGAAAAACTCTACGA
GAGCATGAAGGGCTTAGGTACGAATGACAAGACATTGATTCGTATCATTGTTTCACGCTC
AGAAATTGATTTGGGTGACATCAAAGAAGCATTTGAAGCCAAGTATGGAAAAAGCCTCGA
GAGCTGGGTTAAGGGTGACACCTCAGGCGATTATAAAAAATGTTTGTTAGCACTTATTGG
CGAGTAGAAGCTCATCGCATGAACATTTAAAATCCGATATATGAAAATAATTAGTTATTA
AGAGATAACACACATACACAATATTATTGGACAAAAAATGTTTCTACATTTACACACTAT
GAACATCATGTACTAAAATAATTTGTTTAAAAAAACTTCCATCAGTAATGTTCATTCACA
ATTTGCTTTTATTATTCGTTGGAAATTTGCAAAACTGTAGCTGTTAAAATTCACATAAAA
TATTTTTTTAAAGTTGTTATATTCTTTGCAAGAAAAAAACTACATTTTAGGAAAGAACTA
CATTTAAAAAAGCATTCAAATAAAATGATCGAAATAAAAAAGAGTAAAAACTAAACTGAC
AACTTT

>g10800.t92 Gene=g10800 Length=301
MSSAAYYPFQCKPTVYPADPFDPNEDAGILRKAMKGFGTDEKAIIEVLARRGIVQRLEIA
SAYKTNFGKDLINDLKSELGGKFEDVILALMTPLPQFYAKELHDAISGIEFYEQLYGNSL
ESDLKGDTSGFFKRLCVSLVQGNRDENNGVDQGSALADATALYEAGEGQWGTDESVFNQI
LVTRSYQQLRQVFLEYEAMSGHDIEKAIKREFSGNAEKGFLAIAKVVKSKVDFFAEKLYE
SMKGLGTNDKTLIRIIVSRSEIDLGDIKEAFEAKYGKSLESWVKGDTSGDYKKCLLALIG
E

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g10800.t92 Gene3D G3DSA:1.10.220.10 - 20 92 1.2E-27
14 g10800.t92 Gene3D G3DSA:1.10.220.10 - 109 143 4.3E-9
12 g10800.t92 Gene3D G3DSA:1.10.220.10 - 144 229 2.5E-30
11 g10800.t92 Gene3D G3DSA:1.10.220.10 - 231 301 3.4E-29
5 g10800.t92 PANTHER PTHR10502 ANNEXIN 7 299 8.6E-130
6 g10800.t92 PANTHER PTHR10502:SF212 ANNEXIN B9 7 299 8.6E-130
9 g10800.t92 PRINTS PR00196 Annexin family signature 35 57 1.8E-24
7 g10800.t92 PRINTS PR00196 Annexin family signature 242 262 1.8E-24
8 g10800.t92 PRINTS PR00196 Annexin family signature 286 299 1.8E-24
3 g10800.t92 Pfam PF00191 Annexin 26 90 2.0E-22
4 g10800.t92 Pfam PF00191 Annexin 111 139 2.2E-6
2 g10800.t92 Pfam PF00191 Annexin 158 223 1.5E-23
1 g10800.t92 Pfam PF00191 Annexin 233 298 1.9E-25
15 g10800.t92 ProSitePatterns PS00223 Annexin repeat signature. 38 90 -
16 g10800.t92 ProSitePatterns PS00223 Annexin repeat signature. 246 298 -
23 g10800.t92 ProSiteProfiles PS51897 Annexin repeat profile. 21 92 26.995
22 g10800.t92 ProSiteProfiles PS51897 Annexin repeat profile. 153 225 27.356
21 g10800.t92 ProSiteProfiles PS51897 Annexin repeat profile. 229 300 29.939
17 g10800.t92 SMART SM00335 annex3 38 90 4.1E-22
20 g10800.t92 SMART SM00335 annex3 110 139 0.19
18 g10800.t92 SMART SM00335 annex3 171 223 5.4E-20
19 g10800.t92 SMART SM00335 annex3 246 298 8.2E-26
10 g10800.t92 SUPERFAMILY SSF47874 Annexin 6 300 3.8E-110

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed