Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B9.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10800 g10800.t97 isoform g10800.t97 12051639 12057223
chr_1 g10800 g10800.t97 exon g10800.t97.exon1 12051639 12052051
chr_1 g10800 g10800.t97 TTS g10800.t97 12051653 12051653
chr_1 g10800 g10800.t97 cds g10800.t97.CDS1 12051998 12052051
chr_1 g10800 g10800.t97 exon g10800.t97.exon2 12052686 12052867
chr_1 g10800 g10800.t97 cds g10800.t97.CDS2 12052686 12052867
chr_1 g10800 g10800.t97 exon g10800.t97.exon3 12052960 12053078
chr_1 g10800 g10800.t97 cds g10800.t97.CDS3 12052960 12053078
chr_1 g10800 g10800.t97 exon g10800.t97.exon4 12053171 12053303
chr_1 g10800 g10800.t97 cds g10800.t97.CDS4 12053171 12053303
chr_1 g10800 g10800.t97 exon g10800.t97.exon5 12053380 12053508
chr_1 g10800 g10800.t97 cds g10800.t97.CDS5 12053380 12053508
chr_1 g10800 g10800.t97 exon g10800.t97.exon6 12053572 12053869
chr_1 g10800 g10800.t97 cds g10800.t97.CDS6 12053572 12053869
chr_1 g10800 g10800.t97 exon g10800.t97.exon7 12055388 12055446
chr_1 g10800 g10800.t97 cds g10800.t97.CDS7 12055388 12055417
chr_1 g10800 g10800.t97 exon g10800.t97.exon8 12057132 12057223
chr_1 g10800 g10800.t97 TSS g10800.t97 12057215 12057215

Sequences

>g10800.t97 Gene=g10800 Length=1425
ATTCTCTCAGTTTCAATTTGAACTTCGAGTGAGTAAGATTAAAAACGTAAGTGATCACTT
TCAAGTGTAATAAAAGTTAAATTTATCTTAAAAGTCGTATTAATTGTAAAGAGCAGCGAA
AATGAGTTCAGCAGCCTACTATCCATTCCAATGCAAACCAACCGTTTACCCTGCCGATCC
TTTTGACCCAAATGAAGATGCAGGTATCTTGAGAAAGGCAATGAAAGGATTTGGAACTGA
TGAAAAGGCAATTATTGAAGTGCTTGCTCGTCGTGGAATTGTTCAACGTCTTGAGATTGC
TTCGGCATATAAGACCAACTTTGGCAAGGATTTGATTAATGATTTGAAAAGTGAACTTGG
TGGCAAGTTTGAAGATGTCATTCTTGCTTTGATGACTCCTTTGCCGCAATTCTATGCAAA
GGAATTGCATGATGCAATTTCCGGCATTGGAACTGACGAAGACGCTATCATCGAAATTCT
CTGCACACTCTCCAACTATGGCATTCGTACAATTGCAGAATTCTACGAACAACTGTATGG
AAATTCACTCGAAAGCGACTTGAAGGGAGACACCTCAGGATTCTTTAAGCGTTTATGCGT
ATCATTAGTGCAAGGCAATCGCGATGAAAACAATGGTGTTGATCAAGGTTCTGCTCTTGC
TGATGCTACTGCACTTTATGAAGCCGGTGAAGGACAATGGGGCACTGATGAATCATACCA
ACAATTGAGACAAGTCTTTTTGGAATATGAGGCTATGAGCGGCCACGACATTGAAAAAGC
TATCAAGCGTGAATTCTCAGGAAACGCTGAAAAAGGATTCCTCGCAATCGCCAAGGTTGT
CAAATCAAAGGTTGATTTCTTTGCTGAAAAACTCTACGAGAGCATGAAGGGCTTAGGTAC
GAATGACAAGACATTGATTCGTATCATTGTTTCACGCTCAGAAATTGATTTGGGTGACAT
CAAAGAAGCATTTGAAGCCAAGTATGGAAAAAGCCTCGAGAGCTGGGTTAAGGGTGACAC
CTCAGGCGATTATAAAAAATGTTTGTTAGCACTTATTGGCGAGTAGAAGCTCATCGCATG
AACATTTAAAATCCGATATATGAAAATAATTAGTTATTAAGAGATAACACACATACACAA
TATTATTGGACAAAAAATGTTTCTACATTTACACACTATGAACATCATGTACTAAAATAA
TTTGTTTAAAAAAACTTCCATCAGTAATGTTCATTCACAATTTGCTTTTATTATTCGTTG
GAAATTTGCAAAACTGTAGCTGTTAAAATTCACATAAAATATTTTTTTAAAGTTGTTATA
TTCTTTGCAAGAAAAAAACTACATTTTAGGAAAGAACTACATTTAAAAAAGCATTCAAAT
AAAATGATCGAAATAAAAAAGAGTAAAAACTAAACTGACAACTTT

>g10800.t97 Gene=g10800 Length=314
MSSAAYYPFQCKPTVYPADPFDPNEDAGILRKAMKGFGTDEKAIIEVLARRGIVQRLEIA
SAYKTNFGKDLINDLKSELGGKFEDVILALMTPLPQFYAKELHDAISGIGTDEDAIIEIL
CTLSNYGIRTIAEFYEQLYGNSLESDLKGDTSGFFKRLCVSLVQGNRDENNGVDQGSALA
DATALYEAGEGQWGTDESYQQLRQVFLEYEAMSGHDIEKAIKREFSGNAEKGFLAIAKVV
KSKVDFFAEKLYESMKGLGTNDKTLIRIIVSRSEIDLGDIKEAFEAKYGKSLESWVKGDT
SGDYKKCLLALIGE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g10800.t97 Gene3D G3DSA:1.10.220.10 - 20 92 1.3E-27
13 g10800.t97 Gene3D G3DSA:1.10.220.10 - 94 165 6.6E-26
16 g10800.t97 Gene3D G3DSA:1.10.220.10 - 166 242 1.9E-19
14 g10800.t97 Gene3D G3DSA:1.10.220.10 - 244 314 3.7E-29
5 g10800.t97 PANTHER PTHR10502 ANNEXIN 7 312 1.6E-134
6 g10800.t97 PANTHER PTHR10502:SF212 ANNEXIN B9 7 312 1.6E-134
11 g10800.t97 PRINTS PR00196 Annexin family signature 35 57 2.3E-44
7 g10800.t97 PRINTS PR00196 Annexin family signature 75 91 2.3E-44
9 g10800.t97 PRINTS PR00196 Annexin family signature 102 123 2.3E-44
10 g10800.t97 PRINTS PR00196 Annexin family signature 255 275 2.3E-44
8 g10800.t97 PRINTS PR00196 Annexin family signature 299 312 2.3E-44
4 g10800.t97 Pfam PF00191 Annexin 26 90 2.1E-22
1 g10800.t97 Pfam PF00191 Annexin 98 162 2.3E-22
3 g10800.t97 Pfam PF00191 Annexin 181 236 2.3E-11
2 g10800.t97 Pfam PF00191 Annexin 246 311 2.0E-25
17 g10800.t97 ProSitePatterns PS00223 Annexin repeat signature. 38 90 -
18 g10800.t97 ProSitePatterns PS00223 Annexin repeat signature. 259 311 -
25 g10800.t97 ProSiteProfiles PS51897 Annexin repeat profile. 21 92 26.995
23 g10800.t97 ProSiteProfiles PS51897 Annexin repeat profile. 93 164 27.041
24 g10800.t97 ProSiteProfiles PS51897 Annexin repeat profile. 176 238 8.733
26 g10800.t97 ProSiteProfiles PS51897 Annexin repeat profile. 242 313 29.939
20 g10800.t97 SMART SM00335 annex3 38 90 4.1E-22
19 g10800.t97 SMART SM00335 annex3 110 162 3.3E-21
21 g10800.t97 SMART SM00335 annex3 194 236 3.6E-7
22 g10800.t97 SMART SM00335 annex3 259 311 8.2E-26
12 g10800.t97 SUPERFAMILY SSF47874 Annexin 6 313 1.83E-115

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values