General information for g10825.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Dynein intermediate chain 3, ciliary.
Parent gene
- The parent gene g10825 is located on chr_1: 12153467..12155696 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10825 | g10825.t7 | TTS | g10825.t7 | 12150033 | 12150033 |
| chr_1 | g10825 | g10825.t7 | isoform | g10825.t7 | 12150122 | 12152519 |
| chr_1 | g10825 | g10825.t7 | exon | g10825.t7.exon1 | 12150122 | 12150481 |
| chr_1 | g10825 | g10825.t7 | cds | g10825.t7.CDS1 | 12150122 | 12150481 |
| chr_1 | g10825 | g10825.t7 | exon | g10825.t7.exon2 | 12150538 | 12150734 |
| chr_1 | g10825 | g10825.t7 | cds | g10825.t7.CDS2 | 12150538 | 12150734 |
| chr_1 | g10825 | g10825.t7 | exon | g10825.t7.exon3 | 12150801 | 12150947 |
| chr_1 | g10825 | g10825.t7 | cds | g10825.t7.CDS3 | 12150801 | 12150947 |
| chr_1 | g10825 | g10825.t7 | exon | g10825.t7.exon4 | 12151030 | 12151885 |
| chr_1 | g10825 | g10825.t7 | cds | g10825.t7.CDS4 | 12151030 | 12151714 |
| chr_1 | g10825 | g10825.t7 | exon | g10825.t7.exon5 | 12152401 | 12152519 |
| chr_1 | g10825 | g10825.t7 | TSS | g10825.t7 | 12152793 | 12152793 |
Sequences
>g10825.t7 Gene=g10825 Length=1679
GTGTGTTGCCAACATCATGAAACGTTTTAGAAGAACATTGCCGAGATTTCAAGATTTTGA
TGAATTGATTGTATCAAGTGATAAAATTAAAAAGGAGAGAAGCAAAATTATCAATCCATA
ATTGCTCATTAATTTGTGCTACATATGTAACTACAGAGAATCCCACACTTTCTTCAATTG
GTATCAATCATGTTGAAGGTGGTTGGCCAAAAGATATCAATCGTTTAGATGAAGAGCAAA
CAGCTCGTTATCGTAAGAAACAAGAAAAGGATGAATCGTATGTGACCCAAATGAAAGGTC
TTATAAAGTCATGCGAAAATGCTATTTATCAGAATAATGCTGTTAATTTATATGAAACAT
ATTTCGAAGATATGGAGCAGATAGATTTAAAAGAGGAATATTCTTCGAAAACTTTGAACA
TGTTTCGTGATAGAACTAATAGAAATATTAGAAAAATAGCATGGAATCCAGATGATTCAA
CAAAATTTACAACAGCACATTGTGGCAATCAGACATACTTTGATTATTTGAATGATGAGT
CTAATACGATGCATATTTGGGATATTGAGTATACTAAGAAGCCTATAAGAACTTTTGATA
ACCATGCGCAATCATTATGCTTCGAATATAATCCAAAAGAACATTCGACCTTAGTCACTG
GAATGATCACAGGGCAAATAGCTATATATGATACAAGACAGAATACTCAATTTCCACAAA
CAGTTTCATATCGAGAAAATTCACATAAAGACCAAGTTAATGCTGTTACATTTTATTGCT
CAAAATCAAATATGGAGTTTTTTAGTGGTAGCTCAAGCGGAGAAATTTATTGGTGGGATT
CGAGAATGATTGAAAATGGACCTATTGAAGTTCTCGTATTGCAGCCAGAAGTAATGCAAG
ATAGTATAGCAAAAAAGGAAGAGAAGGCTTTTGGTGTGGTAGCATTAGAGTATGAGAGCA
CTATTCCAACAAAATATATTGTAGGAACAGATCATGGAGTGGTTTATATTTGCAATAAGC
GTTTTAAGACACCGGCTGATAGAATTTATTCTAAAGTTCAATGCTATAATGGTGTAGTAT
CAGCAGTTCAAAGAAATCCTTCATTTTTGAAATTTTTTTTGAGTGATTTTCAAGCGAAAC
TTTGGTGTGAAGAGTTGAAGGAGCAACCAATTTTTTGGACTAAAGAATATTCTTCTGAAC
TCACATTTGGTTGTTGGAATGCTATTAGATGTTCGAGCTTTTATTTATGCAGAATGGATG
GAGTTTTTGATGCATGGGATATTATTCATAGAAGCGACAGGCCTGTTTTATCAACTAAAA
TTTCAGATCACACGCTGTTAACATGTTCACCTCATAAGGAAGGAAAATTAATCCTTGTTG
GCACAAGTGGTGGTGATATACATTTATTACAGCTATCAGAGAACTTAGCCACAACAACAG
TTAATGATAGACCACATATGGCAGTCGTCCTCGATAGAGAGACACGAAGAGAAAAGCTTC
TTGAAAATAAACAACGTGAGGTGAAGTTAAAAGAAAAGGAGAAAGAGCGAGAACAAATTC
GAATGAAGTTAGGCTTGCCAGATCCTGAAGAAGTAGAGATGGCGTTAGCTAACGATTTGG
CTAAACAAGCAGAAGTAAATTTTCATTTACAGATTGAGCAGTTGAAATTACATTGTTAA
>g10825.t7 Gene=g10825 Length=462
MKGLIKSCENAIYQNNAVNLYETYFEDMEQIDLKEEYSSKTLNMFRDRTNRNIRKIAWNP
DDSTKFTTAHCGNQTYFDYLNDESNTMHIWDIEYTKKPIRTFDNHAQSLCFEYNPKEHST
LVTGMITGQIAIYDTRQNTQFPQTVSYRENSHKDQVNAVTFYCSKSNMEFFSGSSSGEIY
WWDSRMIENGPIEVLVLQPEVMQDSIAKKEEKAFGVVALEYESTIPTKYIVGTDHGVVYI
CNKRFKTPADRIYSKVQCYNGVVSAVQRNPSFLKFFLSDFQAKLWCEELKEQPIFWTKEY
SSELTFGCWNAIRCSSFYLCRMDGVFDAWDIIHRSDRPVLSTKISDHTLLTCSPHKEGKL
ILVGTSGGDIHLLQLSENLATTTVNDRPHMAVVLDRETRREKLLENKQREVKLKEKEKER
EQIRMKLGLPDPEEVEMALANDLAKQAEVNFHLQIEQLKLHC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g10825.t7 | Coils | Coil | Coil | 400 | 426 | - |
| 8 | g10825.t7 | Gene3D | G3DSA:2.130.10.10 | - | 26 | 368 | 2.7E-19 |
| 1 | g10825.t7 | PANTHER | PTHR12442:SF7 | DYNEIN INTERMEDIATE CHAIN 2, AXONEMAL | 2 | 424 | 5.8E-103 |
| 2 | g10825.t7 | PANTHER | PTHR12442 | DYNEIN INTERMEDIATE CHAIN | 2 | 424 | 5.8E-103 |
| 7 | g10825.t7 | SMART | SM00320 | WD40_4 | 38 | 91 | 270.0 |
| 6 | g10825.t7 | SMART | SM00320 | WD40_4 | 95 | 134 | 5.5 |
| 5 | g10825.t7 | SMART | SM00320 | WD40_4 | 142 | 183 | 1.6 |
| 4 | g10825.t7 | SMART | SM00320 | WD40_4 | 337 | 374 | 210.0 |
| 3 | g10825.t7 | SUPERFAMILY | SSF50978 | WD40 repeat-like | 49 | 376 | 2.43E-27 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
