General information for g10825.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Exostosin-2.
Parent gene
- The parent gene g10825 is located on chr_1: 12153467..12155696 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10825 | g10825.t8 | TTS | g10825.t8 | 12153411 | 12153411 |
| chr_1 | g10825 | g10825.t8 | isoform | g10825.t8 | 12153467 | 12155022 |
| chr_1 | g10825 | g10825.t8 | exon | g10825.t8.exon1 | 12153467 | 12155022 |
| chr_1 | g10825 | g10825.t8 | cds | g10825.t8.CDS1 | 12153468 | 12154859 |
| chr_1 | g10825 | g10825.t8 | TSS | g10825.t8 | 12155782 | 12155782 |
Sequences
>g10825.t8 Gene=g10825 Length=1556
ATCAGGAGATGCGATAATTGCTGGAGCAGGGTTTAATACACAAACATATCGATATGGATT
TGATTTTTCAATTCCGTTCTATAGTCCATTGTTGGACAATTATGTGAAGAAGACAGGTGA
TAAAACAACCAAGAACTATTTTCTAATTTCACCACAACTCAACATGTATGACTATCATCG
ACGACTTATGCAAGAAATTGTATTAGAAGACTCTAATAATAATATTCTTTTGCTTCAAAA
ATGTACTCAAGAGATTTTTGAAGATAAAATCTCATCTAATCTAGAACTCATTGACCATGA
CATGCGATGCTCATTTCCTGCTTTAACAGCATTAGAGTATCCTGAAATTTTAGAGCAAGG
AATATTTTGTCTTGTTATTAGAGGCGTTAGACTTGCTCAACCATCTCTTCTCGAATCATT
AGCAACAGGCTGTATTCCTGTTATTGTAGCCGACAACATTATACTGCCATTTTCTGAAAT
TATCGATTGGACATTAGCTTCAATTTCTGTACGTGAGGCTGATTTGCATTCAATTTCATC
AGTATTAAAAGCAGTTTCACAGACTCGTATTGAAGAGTTACAACGACAAGGGCGCTTTTT
ATATGAAAAATATTTTAAAAATATTGAAACAATTGTTCATTCGATGTTGGAAGAATTAAA
TGATAGAGTATTTCCACATTTATCTCTTGACTACAATAATTGGAATATAGAAAATCTGCC
AAATTCTGCTCAAAATCCACTATTTTTGCCATTAATGGGATCAAAATCACTTGGTTTCAC
TGCCGTCATTCTTACATATGACCGCGTTGAGAGTCTCTTTACACTTATTCAAAAATTGTC
ATTTGTACCATCTCTGCAAAAAATACTCGTCATTTGGAATAATCAGAAAAAGCAACCACC
ACCGATGTCATCATTTCCAAAAATAACTAAACCAATAAAAATTATTCAGACCAAGGCAAA
TAAATTGTCAAATCGCTTTTATCCATATCCTGAAATAGAAACAGAAGCCGTGCTAACAAT
TGATGATGATATTACTATGCTAACTAGCGATGAACTCGATTTTGGTTTTGAAGTATGGCG
TGAATTTCCTGATCGCATTGTTGGATTTCCATCACGAACACATGTATTTGAAAACAATGA
GTATAAATATGAATCAGAATGGACGAATTCATTATCAATGGTTTTAACTGGTGTTGCATT
TCATCACAAATATTGGAATTATGCTTATACAACTTCAATGCCTGGTAATATCAAAGAATA
TGTTGATGAACATATGAATTGTGAAGATATTGCTATGAATTTTTTGGTCTCAAATAGGAC
TGGAAAAGGTCCAATAAAAGTAACACCACGTAAAAAATTTAAATGTCATTCGAGACAATG
TACAAATGCTGAAATGCTCTCAAGTGATCAAGGACATATGATCGAGAGAAGTGAATGCAT
TAATTATTTTACAAAAATATATGGTGTAATGCCTCTAAAAACAGTTGAATATCGAGCCGA
TCCTGTTCTTTTCCTCGATAATTTCCCAGAAAAATTAAAACGATTTAATGATGTAG
>g10825.t8 Gene=g10825 Length=464
MYDYHRRLMQEIVLEDSNNNILLLQKCTQEIFEDKISSNLELIDHDMRCSFPALTALEYP
EILEQGIFCLVIRGVRLAQPSLLESLATGCIPVIVADNIILPFSEIIDWTLASISVREAD
LHSISSVLKAVSQTRIEELQRQGRFLYEKYFKNIETIVHSMLEELNDRVFPHLSLDYNNW
NIENLPNSAQNPLFLPLMGSKSLGFTAVILTYDRVESLFTLIQKLSFVPSLQKILVIWNN
QKKQPPPMSSFPKITKPIKIIQTKANKLSNRFYPYPEIETEAVLTIDDDITMLTSDELDF
GFEVWREFPDRIVGFPSRTHVFENNEYKYESEWTNSLSMVLTGVAFHHKYWNYAYTTSMP
GNIKEYVDEHMNCEDIAMNFLVSNRTGKGPIKVTPRKKFKCHSRQCTNAEMLSSDQGHMI
ERSECINYFTKIYGVMPLKTVEYRADPVLFLDNFPEKLKRFNDV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g10825.t8 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 202 | 456 | 0 |
| 3 | g10825.t8 | PANTHER | PTHR11062:SF128 | EXOSTOSIN-2 | 15 | 414 | 0 |
| 4 | g10825.t8 | PANTHER | PTHR11062 | EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED | 15 | 414 | 0 |
| 2 | g10825.t8 | Pfam | PF03016 | Exostosin family | 46 | 130 | 0 |
| 1 | g10825.t8 | Pfam | PF09258 | Glycosyl transferase family 64 domain | 205 | 450 | 0 |
| 5 | g10825.t8 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 205 | 451 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006486 | protein glycosylation | BP |
| GO:0016757 | glycosyltransferase activity | MF |
| GO:0016021 | integral component of membrane | CC |
| GO:0015020 | glucuronosyltransferase activity | MF |
| GO:0015012 | heparan sulfate proteoglycan biosynthetic process | BP |
| GO:0006024 | glycosaminoglycan biosynthetic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
