Gene loci information

Transcript annotation

  • This transcript has been annotated as Exostosin-2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10825 g10825.t9 TTS g10825.t9 12153411 12153411
chr_1 g10825 g10825.t9 isoform g10825.t9 12153467 12155696
chr_1 g10825 g10825.t9 exon g10825.t9.exon1 12153467 12155022
chr_1 g10825 g10825.t9 cds g10825.t9.CDS1 12153468 12155022
chr_1 g10825 g10825.t9 exon g10825.t9.exon2 12155078 12155158
chr_1 g10825 g10825.t9 cds g10825.t9.CDS2 12155078 12155158
chr_1 g10825 g10825.t9 exon g10825.t9.exon3 12155221 12155696
chr_1 g10825 g10825.t9 cds g10825.t9.CDS3 12155221 12155696
chr_1 g10825 g10825.t9 TSS g10825.t9 12155782 12155782

Sequences

>g10825.t9 Gene=g10825 Length=2113
ATGAAAGATAAAAATAGTGCCATAAAAGTTTTCTTAAGTGACAAAGTTGGAATATCTGGT
GGACTTGTTTTAGGATTTATAGCTTTAGTTTTTATTTTTAATTCACAATTGAAGCATCCT
GAAGTTTTCAATTTAAACACTTATAATCATGTTCGCTTCGATAAACTATCAGAATTGAGT
CGTACACGTAATCCTAACTGCACAATATTCGATTGTTTCAATGTATATCGATGTGGAAGT
CATCAGAACAAAATTAGTATTTATATTTATCCTCTTACGGAATATTCTGATGACAACAAA
AAATCAAAAACATTTATAACAAAAGAATTTTATCAAATATTAAAGGCAATAATCAAAAGT
CCTTATTATACTTCAAATCCGCAAGAGGCTTGTTTATTCGTACCAAGTATAGATTTATTG
AACCAAAATCTTATTGATAAGAGTTTAGTTGAAAAAGCACTTGCATCATTAAATTATTGG
AATAATGGACGCAATCATATCTTGTTTAACATGCTCCCTGGAGAAGCTCCCAATTATTCT
ACAGTTTTTGATGTGAAATCAGGAGATGCGATAATTGCTGGAGCAGGGTTTAATACACAA
ACATATCGATATGGATTTGATTTTTCAATTCCGTTCTATAGTCCATTGTTGGACAATTAT
GTGAAGAAGACAGGTGATAAAACAACCAAGAACTATTTTCTAATTTCACCACAACTCAAC
ATGTATGACTATCATCGACGACTTATGCAAGAAATTGTATTAGAAGACTCTAATAATAAT
ATTCTTTTGCTTCAAAAATGTACTCAAGAGATTTTTGAAGATAAAATCTCATCTAATCTA
GAACTCATTGACCATGACATGCGATGCTCATTTCCTGCTTTAACAGCATTAGAGTATCCT
GAAATTTTAGAGCAAGGAATATTTTGTCTTGTTATTAGAGGCGTTAGACTTGCTCAACCA
TCTCTTCTCGAATCATTAGCAACAGGCTGTATTCCTGTTATTGTAGCCGACAACATTATA
CTGCCATTTTCTGAAATTATCGATTGGACATTAGCTTCAATTTCTGTACGTGAGGCTGAT
TTGCATTCAATTTCATCAGTATTAAAAGCAGTTTCACAGACTCGTATTGAAGAGTTACAA
CGACAAGGGCGCTTTTTATATGAAAAATATTTTAAAAATATTGAAACAATTGTTCATTCG
ATGTTGGAAGAATTAAATGATAGAGTATTTCCACATTTATCTCTTGACTACAATAATTGG
AATATAGAAAATCTGCCAAATTCTGCTCAAAATCCACTATTTTTGCCATTAATGGGATCA
AAATCACTTGGTTTCACTGCCGTCATTCTTACATATGACCGCGTTGAGAGTCTCTTTACA
CTTATTCAAAAATTGTCATTTGTACCATCTCTGCAAAAAATACTCGTCATTTGGAATAAT
CAGAAAAAGCAACCACCACCGATGTCATCATTTCCAAAAATAACTAAACCAATAAAAATT
ATTCAGACCAAGGCAAATAAATTGTCAAATCGCTTTTATCCATATCCTGAAATAGAAACA
GAAGCCGTGCTAACAATTGATGATGATATTACTATGCTAACTAGCGATGAACTCGATTTT
GGTTTTGAAGTATGGCGTGAATTTCCTGATCGCATTGTTGGATTTCCATCACGAACACAT
GTATTTGAAAACAATGAGTATAAATATGAATCAGAATGGACGAATTCATTATCAATGGTT
TTAACTGGTGTTGCATTTCATCACAAATATTGGAATTATGCTTATACAACTTCAATGCCT
GGTAATATCAAAGAATATGTTGATGAACATATGAATTGTGAAGATATTGCTATGAATTTT
TTGGTCTCAAATAGGACTGGAAAAGGTCCAATAAAAGTAACACCACGTAAAAAATTTAAA
TGTCATTCGAGACAATGTACAAATGCTGAAATGCTCTCAAGTGATCAAGGACATATGATC
GAGAGAAGTGAATGCATTAATTATTTTACAAAAATATATGGTGTAATGCCTCTAAAAACA
GTTGAATATCGAGCCGATCCTGTTCTTTTCCTCGATAATTTCCCAGAAAAATTAAAACGA
TTTAATGATGTAG

>g10825.t9 Gene=g10825 Length=704
MKDKNSAIKVFLSDKVGISGGLVLGFIALVFIFNSQLKHPEVFNLNTYNHVRFDKLSELS
RTRNPNCTIFDCFNVYRCGSHQNKISIYIYPLTEYSDDNKKSKTFITKEFYQILKAIIKS
PYYTSNPQEACLFVPSIDLLNQNLIDKSLVEKALASLNYWNNGRNHILFNMLPGEAPNYS
TVFDVKSGDAIIAGAGFNTQTYRYGFDFSIPFYSPLLDNYVKKTGDKTTKNYFLISPQLN
MYDYHRRLMQEIVLEDSNNNILLLQKCTQEIFEDKISSNLELIDHDMRCSFPALTALEYP
EILEQGIFCLVIRGVRLAQPSLLESLATGCIPVIVADNIILPFSEIIDWTLASISVREAD
LHSISSVLKAVSQTRIEELQRQGRFLYEKYFKNIETIVHSMLEELNDRVFPHLSLDYNNW
NIENLPNSAQNPLFLPLMGSKSLGFTAVILTYDRVESLFTLIQKLSFVPSLQKILVIWNN
QKKQPPPMSSFPKITKPIKIIQTKANKLSNRFYPYPEIETEAVLTIDDDITMLTSDELDF
GFEVWREFPDRIVGFPSRTHVFENNEYKYESEWTNSLSMVLTGVAFHHKYWNYAYTTSMP
GNIKEYVDEHMNCEDIAMNFLVSNRTGKGPIKVTPRKKFKCHSRQCTNAEMLSSDQGHMI
ERSECINYFTKIYGVMPLKTVEYRADPVLFLDNFPEKLKRFNDV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g10825.t9 Gene3D G3DSA:3.90.550.10 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 442 696 5.3E-90
3 g10825.t9 PANTHER PTHR11062:SF128 EXOSTOSIN-2 23 653 1.5E-146
4 g10825.t9 PANTHER PTHR11062 EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 23 653 1.5E-146
2 g10825.t9 Pfam PF03016 Exostosin family 82 370 1.4E-45
1 g10825.t9 Pfam PF09258 Glycosyl transferase family 64 domain 445 690 1.1E-88
8 g10825.t9 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 11 -
10 g10825.t9 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 33 -
9 g10825.t9 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 34 704 -
6 g10825.t9 SUPERFAMILY SSF53448 Nucleotide-diphospho-sugar transferases 445 691 3.15E-26
5 g10825.t9 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 16 33 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006486 protein glycosylation BP
GO:0016757 glycosyltransferase activity MF
GO:0016021 integral component of membrane CC
GO:0015020 glucuronosyltransferase activity MF
GO:0015012 heparan sulfate proteoglycan biosynthetic process BP
GO:0006024 glycosaminoglycan biosynthetic process BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values