General information for g1083.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Luciferin 4-monooxygenase.
Parent gene
- The parent gene g1083 is located on chr_3: 8057087..8059045 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1083 | g1083.t1 | TTS | g1083.t1 | 8057059 | 8057059 |
| chr_3 | g1083 | g1083.t1 | isoform | g1083.t1 | 8057087 | 8059045 |
| chr_3 | g1083 | g1083.t1 | exon | g1083.t1.exon1 | 8057087 | 8057677 |
| chr_3 | g1083 | g1083.t1 | cds | g1083.t1.CDS1 | 8057087 | 8057677 |
| chr_3 | g1083 | g1083.t1 | exon | g1083.t1.exon2 | 8057963 | 8059045 |
| chr_3 | g1083 | g1083.t1 | cds | g1083.t1.CDS2 | 8057963 | 8059045 |
| chr_3 | g1083 | g1083.t1 | TSS | g1083.t1 | NA | NA |
Sequences
>g1083.t1 Gene=g1083 Length=1674
ATGTTCAAACCAACTTTCAATCAAGCTACAAAAGTCTGGAGTGGTCCAAAAGTGCCTCCA
ATCTTCAATCCTGATCAAAATCTCGGTCAATTAATTGTGAAAGTTCTTGAACAAACTCCA
GATGCTGAGACACAAATTTCAGCTGATACAAATGTTTCAGTAACTTGTGGTGAAATGCGA
GAAAGAATTTTGAAATTTGCAGTTCATTTGAATAATCTTGGACTTAAACAAGGCGATGTT
ATTGGTGTTGTAGCTGGAAATACTGAAAATATTGCTCCAGTTGTTTTTGCTTGCTTTCTT
CTTGGACTTCCTGTTAATCCTTTAGCACCGATCATGATTGAAAGTGACATTGTGCAAATG
TATTCAAAAACTAAACCAAAATTGATCTTTTGTGATGAGAAAAATTTTAAAATTGTTCAA
AATGCAGTAGACATGATGAAAAGTGAATCAAAAATTTACACAGTGATGGAAAGAGTTGAT
GGTTATGAATGTGTAACCGAAATACTCAAGAACGATATCAATTTAGAAGACTTTATTTAT
CCAGAAGTAAATTCAGATTCAATAACTTTAATACTTTCATCATCAGGTTCAACTGGTTCT
CCAAAAGGAATTCTAAAATCTCATAAAAATATGATAATCGAATGTCATCCAATAAGTAAT
TACAATCCAGATGGTGTAAATGTTCTTTTTCAGTATTCACCAATATTTTGGTACAGTGGT
TTATATTTTTTGATCAAAGGTGTTCTTTACAAATACAAAAGAATTATCACAACGCAATCT
TTTAGCCGTGAAGATTTTCTCAAAATCATGCATAAATATCAAGTGACTCATGTATTTTTG
CCTCCTTATGCCATTGCAAATTTAATACAGCTTCAAAATCTTGAACCATTTTTGAATGTT
AAATGCTGGATGGTTGGCGGGTCAGCAGTTTCAAAATTTTTATGTGAAAAATTTCAACCT
TTTATACCAAATGGTGTGATTTGTATTGTTTATGCATGTTCGGAGCAAGCTATATTGACA
ACAAATCAGAGCATGGAAAAATATGGAAGTTCTGGTGTTGTGACTTTTAATAAATGTTTA
AAAATAATCGATGAGAATGGGAATGCTCAAAGTAATAATCAACAAGGTGAAATTTGTGTA
AAAAGCATTTCAAAATTTCAAGGTTATATGAATGAACCTGAAAAGACAAAAGAAGCTTTT
GATGGTGAATGGTTGAAAACAGGTGACATTGGTTATTTCGATGATGATGGCTACATTTAT
ATTATTGACCGCAAAAAAGATATGATGAAATTTCAAGGATATCAAGTGACTCCATCAGAA
ATTGAAACAATTATTAATGAAATAAAAGGTGTTGTAAGCAGTTGTGTTGTTGGAGTATTT
GATTCAGTCAACAGCAATGACATCATTCATGCTTTTGTGATTATTGAAGAATCAAGTGAT
TTAACTGAAAATATTGTGCTAAATTACGTTAATTCAAAAGTCATAGACCCAAAAAAGATT
CGAGGTGGAGTTCATTTTGTGAAATCTTTTGCAACGGGCCTCACAGGAAAAATTTGTCGA
ATTCAAATGAGAAAACAAGCCGCAGAGCTCATAAACATAAATGAAAAAGTCGATGACCAT
CCTCGCTTCATGAGTTCAAACATAAACATAATTTGTAGTCACAAGAGCATTTAA
>g1083.t1 Gene=g1083 Length=557
MFKPTFNQATKVWSGPKVPPIFNPDQNLGQLIVKVLEQTPDAETQISADTNVSVTCGEMR
ERILKFAVHLNNLGLKQGDVIGVVAGNTENIAPVVFACFLLGLPVNPLAPIMIESDIVQM
YSKTKPKLIFCDEKNFKIVQNAVDMMKSESKIYTVMERVDGYECVTEILKNDINLEDFIY
PEVNSDSITLILSSSGSTGSPKGILKSHKNMIIECHPISNYNPDGVNVLFQYSPIFWYSG
LYFLIKGVLYKYKRIITTQSFSREDFLKIMHKYQVTHVFLPPYAIANLIQLQNLEPFLNV
KCWMVGGSAVSKFLCEKFQPFIPNGVICIVYACSEQAILTTNQSMEKYGSSGVVTFNKCL
KIIDENGNAQSNNQQGEICVKSISKFQGYMNEPEKTKEAFDGEWLKTGDIGYFDDDGYIY
IIDRKKDMMKFQGYQVTPSEIETIINEIKGVVSSCVVGVFDSVNSNDIIHAFVIIEESSD
LTENIVLNYVNSKVIDPKKIRGGVHFVKSFATGLTGKICRIQMRKQAAELININEKVDDH
PRFMSSNINIICSHKSI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g1083.t1 | Gene3D | G3DSA:3.40.50.12780 | - | 10 | 427 | 0 |
| 6 | g1083.t1 | Gene3D | G3DSA:3.30.300.30 | - | 428 | 532 | 0 |
| 2 | g1083.t1 | PANTHER | PTHR24096:SF353 | GH16244P-RELATED | 4 | 529 | 0 |
| 3 | g1083.t1 | PANTHER | PTHR24096 | LONG-CHAIN-FATTY-ACID–COA LIGASE | 4 | 529 | 0 |
| 1 | g1083.t1 | Pfam | PF00501 | AMP-binding enzyme | 36 | 431 | 0 |
| 4 | g1083.t1 | SUPERFAMILY | SSF56801 | Acetyl-CoA synthetase-like | 12 | 530 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed