General information for g10833.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein catecholamines up.
Parent gene
- The parent gene g10833 is located on chr_1: 12172451..12172719 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10833 | g10833.t1 | TTS | g10833.t1 | 12171298 | 12171298 |
| chr_1 | g10833 | g10833.t1 | isoform | g10833.t1 | 12171412 | 12172719 |
| chr_1 | g10833 | g10833.t1 | exon | g10833.t1.exon1 | 12171412 | 12172364 |
| chr_1 | g10833 | g10833.t1 | cds | g10833.t1.CDS1 | 12171412 | 12172364 |
| chr_1 | g10833 | g10833.t1 | exon | g10833.t1.exon2 | 12172452 | 12172719 |
| chr_1 | g10833 | g10833.t1 | cds | g10833.t1.CDS2 | 12172452 | 12172719 |
| chr_1 | g10833 | g10833.t1 | TSS | g10833.t1 | 12172907 | 12172907 |
Sequences
>g10833.t1 Gene=g10833 Length=1221
ATGCATCGAGCTGTGTTTTGGAATTTAACATTCTTGTTTATTTTACTTTGTACTGTGAAT
CTGATTCGTGCACACGGTCACTCACACGATGATGATCATCATCATCACCACCATCATCAT
TCGCATGAAGAACCAAGTTTCAAATATTCAAAAGCCGCAAATGAGAAAATAAAAGCAGAA
AAACACCATCATCATCATAACCATGATGATCATCATTCACATTCTGAGCGTTTGGAACAA
AAAAGACCAAAAGTTGATACGTCAACAGATGGTTTCAATATTTGGCTTCACTCAATAGGT
TCAACACTTCTTATCAGTGCAGCTCCTTTCTTTATTCTTTATTTAGTTCCGCTGGATAAT
ACTGAAAAAATGCAACCTCGATTGAAAACGCTTCTTGCTTTCGCATCTGGTGGATTATTA
GGTGATGCATTTTTACATCTCATTCCTCACTCTGTTGTACCACACGACCATCACTCGCAT
TCTCATTCACATGCTCACACTCATGGAGGAGGACATCATGACCATGAACATGAAGGACAT
GATCATTCTCACGATATGTGGATTGGATTATGGGTCCTCGCTGGAATTATTACATTTTTA
ACTGTTGAAAAAGCAGTTAGAATCTTAAAAATCAGTCATGATCATGGACATAGTCATGGA
GGAGGCAAAAACGAAGATGAAAAAAAGGAACTTGTTAAGAAAAAAGAAGAGAAAGATTTA
GACAAGAAAAAGAAGAAAAAAGAAAAGGAAGATGAAGAAACAGAGGCTAAACCAAGTATG
GAAGTTGCTGGATATCTCAATTTAGCTGCAGATTTTACGCATAATTTTACTGATGGTCTT
GCTATTGGAGCATCTTATTTAGTTGGAAATAGTATTGGAATAGTGACAACAATTACAATT
CTTCTTCATGAAGTACCTCATGAAATTGGTGATTTTGCAATTTTAATCAAATCAGGATGT
TCAAAGAAGAAAGCAATGTTTCTTCAATTAACGACAGCAGTTGGTGCATTAGCTGGCAAT
GTGCTTGCATTATTGGGTACTTCAGAAGATTCATCGCCATGGATTTTACCTTTCACTGCA
GGTGGATTTATCTATATTGCCACAGTCAGTGTCATTCCAGAGCTACTCGAACAAAATACG
AAACTCGGCCAATCATTAAAAGAAATTTTTGCTCTTTTGTTGGGCGTAGGAATGATGGTC
CTTATAACTCTCATTGAATAG
>g10833.t1 Gene=g10833 Length=406
MHRAVFWNLTFLFILLCTVNLIRAHGHSHDDDHHHHHHHHSHEEPSFKYSKAANEKIKAE
KHHHHHNHDDHHSHSERLEQKRPKVDTSTDGFNIWLHSIGSTLLISAAPFFILYLVPLDN
TEKMQPRLKTLLAFASGGLLGDAFLHLIPHSVVPHDHHSHSHSHAHTHGGGHHDHEHEGH
DHSHDMWIGLWVLAGIITFLTVEKAVRILKISHDHGHSHGGGKNEDEKKELVKKKEEKDL
DKKKKKKEKEDEETEAKPSMEVAGYLNLAADFTHNFTDGLAIGASYLVGNSIGIVTTITI
LLHEVPHEIGDFAILIKSGCSKKKAMFLQLTTAVGALAGNVLALLGTSEDSSPWILPFTA
GGFIYIATVSVIPELLEQNTKLGQSLKEIFALLLGVGMMVLITLIE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g10833.t1 | Coils | Coil | Coil | 224 | 257 | - |
| 33 | g10833.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 49 | - |
| 32 | g10833.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 83 | - |
| 34 | g10833.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 157 | 179 | - |
| 35 | g10833.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 258 | - |
| 2 | g10833.t1 | PANTHER | PTHR16950 | ZINC TRANSPORTER SLC39A7 HISTIDINE-RICH MEMBRANE PROTEIN KE4 | 23 | 406 | 8.5E-154 |
| 3 | g10833.t1 | PANTHER | PTHR16950:SF25 | ZINC TRANSPORTER SLC39A7 | 23 | 406 | 8.5E-154 |
| 1 | g10833.t1 | Pfam | PF02535 | ZIP Zinc transporter | 93 | 402 | 2.0E-75 |
| 14 | g10833.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 24 | - |
| 15 | g10833.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 8 | - |
| 16 | g10833.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 9 | 19 | - |
| 23 | g10833.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 20 | 24 | - |
| 13 | g10833.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 25 | 93 | - |
| 21 | g10833.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 94 | 116 | - |
| 9 | g10833.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 117 | 127 | - |
| 19 | g10833.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 128 | 148 | - |
| 10 | g10833.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 149 | 185 | - |
| 18 | g10833.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 186 | 202 | - |
| 7 | g10833.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 203 | 326 | - |
| 20 | g10833.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 327 | 348 | - |
| 12 | g10833.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 349 | 353 | - |
| 17 | g10833.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 354 | 376 | - |
| 8 | g10833.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 377 | 387 | - |
| 22 | g10833.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 388 | 405 | - |
| 11 | g10833.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 406 | 406 | - |
| 5 | g10833.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 24 | - |
| 4 | g10833.t1 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 30 | - |
| 31 | g10833.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 5 | 27 | - |
| 25 | g10833.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 96 | 118 | - |
| 26 | g10833.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 131 | 153 | - |
| 29 | g10833.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 187 | 209 | - |
| 30 | g10833.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 280 | 302 | - |
| 24 | g10833.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 325 | 347 | - |
| 27 | g10833.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 354 | 373 | - |
| 28 | g10833.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 388 | 405 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0055085 | transmembrane transport | BP |
| GO:0046873 | metal ion transmembrane transporter activity | MF |
| GO:0030001 | metal ion transport | BP |
KEGG
Orthology
- This transcript has been annotated with K14713 (solute carrier family 39 (zinc transporter), member 7)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
