Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10833 g10833.t8 TTS g10833.t8 12171298 12171298
chr_1 g10833 g10833.t8 isoform g10833.t8 12171814 12172719
chr_1 g10833 g10833.t8 exon g10833.t8.exon1 12171814 12172364
chr_1 g10833 g10833.t8 cds g10833.t8.CDS1 12171814 12172263
chr_1 g10833 g10833.t8 exon g10833.t8.exon2 12172448 12172719
chr_1 g10833 g10833.t8 TSS g10833.t8 12172907 12172907

Sequences

>g10833.t8 Gene=g10833 Length=823
ATGCATCGAGCTGTGTTTTGGAATTTAACATTCTTGTTTATTTTACTTTGTACTGTGAAT
CTGATTCGTGCACACGGTCACTCACACGATGATGATCATCATCATCACCACCATCATCAT
TCGCATGAAGAACCAAGTTTCAAATATTCAAAAGCCGCAAATGAGAAAATAAAAGCAGAA
AAACACCATCATCATCATAACCATGATGATCATCATTCACATTCTGAGCGTTTGGAACAA
AAAAGACCAAAAGTTGATACGTCAACAGGTAAATGGTTTCAATATTTGGCTTCACTCAAT
AGGTTCAACACTTCTTATCAGTGCAGCTCCTTTCTTTATTCTTTATTTAGTTCCGCTGGA
TAATACTGAAAAAATGCAACCTCGATTGAAAACGCTTCTTGCTTTCGCATCTGGTGGATT
ATTAGGTGATGCATTTTTACATCTCATTCCTCACTCTGTTGTACCACACGACCATCACTC
GCATTCTCATTCACATGCTCACACTCATGGAGGAGGACATCATGACCATGAACATGAAGG
ACATGATCATTCTCACGATATGTGGATTGGATTATGGGTCCTCGCTGGAATTATTACATT
TTTAACTGTTGAAAAAGCAGTTAGAATCTTAAAAATCAGTCATGATCATGGACATAGTCA
TGGAGGAGGCAAAAACGAAGATGAAAAAAAGGAACTTGTTAAGAAAAAAGAAGAGAAAGA
TTTAGACAAGAAAAAGAAGAAAAAAGAAAAGGAAGATGAAGAAACAGAGGCTAAACCAAG
TATGGAAGTTGCTGGATATCTCAATTTAGCTGCAGATTTTACG

>g10833.t8 Gene=g10833 Length=150
MQPRLKTLLAFASGGLLGDAFLHLIPHSVVPHDHHSHSHSHAHTHGGGHHDHEHEGHDHS
HDMWIGLWVLAGIITFLTVEKAVRILKISHDHGHSHGGGKNEDEKKELVKKKEEKDLDKK
KKKKEKEDEETEAKPSMEVAGYLNLAADFT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g10833.t8 Coils Coil Coil 101 134 -
8 g10833.t8 MobiDBLite mobidb-lite consensus disorder prediction 32 57 -
6 g10833.t8 MobiDBLite mobidb-lite consensus disorder prediction 90 139 -
7 g10833.t8 MobiDBLite mobidb-lite consensus disorder prediction 90 135 -
2 g10833.t8 PANTHER PTHR16950 ZINC TRANSPORTER SLC39A7 HISTIDINE-RICH MEMBRANE PROTEIN KE4 2 150 9.6E-43
3 g10833.t8 PANTHER PTHR16950:SF25 ZINC TRANSPORTER SLC39A7 2 150 9.6E-43
1 g10833.t8 Pfam PF02535 ZIP Zinc transporter 3 131 8.3E-19
13 g10833.t8 Phobius SIGNAL_PEPTIDE Signal peptide region 1 22 -
14 g10833.t8 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 6 -
15 g10833.t8 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 7 17 -
17 g10833.t8 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 18 22 -
12 g10833.t8 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 23 62 -
16 g10833.t8 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 63 79 -
11 g10833.t8 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 80 150 -
9 g10833.t8 SignalP_EUK SignalP-noTM SignalP-noTM 1 18 -
4 g10833.t8 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 7 29 -
5 g10833.t8 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 64 86 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0055085 transmembrane transport BP
GO:0046873 metal ion transmembrane transporter activity MF
GO:0030001 metal ion transport BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values