General information for g1084.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Luciferin 4-monooxygenase.
Parent gene
- The parent gene g1084 is located on chr_3: 8059856..8061505 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1084 | g1084.t1 | isoform | g1084.t1 | 8059856 | 8061505 |
| chr_3 | g1084 | g1084.t1 | exon | g1084.t1.exon1 | 8059856 | 8060371 |
| chr_3 | g1084 | g1084.t1 | cds | g1084.t1.CDS1 | 8059856 | 8060371 |
| chr_3 | g1084 | g1084.t1 | exon | g1084.t1.exon2 | 8060423 | 8061505 |
| chr_3 | g1084 | g1084.t1 | cds | g1084.t1.CDS2 | 8060423 | 8061505 |
| chr_3 | g1084 | g1084.t1 | TSS | g1084.t1 | 8061546 | 8061546 |
| chr_3 | g1084 | g1084.t1 | TTS | g1084.t1 | NA | NA |
Sequences
>g1084.t1 Gene=g1084 Length=1599
ATGTTCAAGTCAACTTACGATAAAGCTACAAAAGTCTGGAGTGGTCCAAAAGTGCCACCA
ATCTTCAATCCTGATCAAAATCTTGGCCAATTGATTGTAAAAGTTCTTGAGCAAACTCCA
GATGCTGAGACACAAATTTCAGCTGATACAAATGTTTCAGTAACTTGTGGTGAAATGCGA
GAAAGAATTTTGAAATTCGCAGTTCATTTGAATAATTTTGGACTTAAACAAGGCGATGTT
ATTGGTGTTGTAGCTGGAAATACTGAAAATATTGCTCCAGTTGTTTTTGCTTGTTTTCTA
CTTGGACTTCCTGTTAATCCTTTAGCACCGATCATGATTGAAAGTGACATTGTACAAATG
TTTTCGAAAACTAAACCAAAAATGATCTTTTGTGATGAGAAAAATTTAAGAACTGTTCAA
AATGCACTAGACATGATGAAAAGTGAAGCAAAAATTTATACAGTGATGGAAAAAGTTGAT
GGTTATGAATGTGTAACTGAAATACTCAAGAACGATATTAAGTTTGAAGATCTTATTTAT
CCAGAAGTTGATCCAAATTCAACATTAATGATCATTTGTTCATCTGGTTCAACTGGATTT
CCCAAAGGAATTTTAAAGTCTCATAAAAATTTCTTAACTGAATTTCCTACAATTTTGCAT
TACAATCCTGAAGGTCAAAATCGAACATTTTTATTTTCTGCAATATTTTGGCTAAGCGGC
ATACTTTTTTTGATTCTTGGAACACTTTATAAATTTACAAGAATTATCACAACGGAATCC
TTTGATGCACAACTTATGGTTGATATAATTAAAAAATATAAAGTCACTCATGCTTTCACA
CCACCATTTTCAATTTTAAATATTTTACAATTGAACAATTTAGAGCAACTTTCAAGTATA
AAATATTGGATGACTGGTGGGGCAATAGTTGATAAAAATCTTTGTGAAAAATTTAAAAAG
TTTCTTCCTAATGGAATTATCGGTACAGCTTATGGTTCATCTGAGCAAGGAGTAATTACA
GAAAATAAGAATCAAAATAGATACGGAAGTGTAGGAGTAGTAGTTAACAACACAAGTGTT
AAGATAATTGATGAAAATGGAAAATCACTTGATAATAACCAACAAGGTGAAATATGTGGT
AAAATCTCAACTAAATTTCTTGATTATGTTGGCGATCATAAAACGTATTTAGAAAGTTTT
GATGGTGATTGGTTTAAAACAGGAGATATTGGATATTTTGATGATGATGGTTATCTGCAT
GTTATTGATCGAAAGAAAGAACTTTTAAAATTCAACAATTATCAAGTGACTCCATCAGAA
CTTGAAGCAATAGTAAATGAAATTGATGGAATTATCAGCAGCTGTGTTGTTGGTGTTTTA
AATAAAAGCTCTGGAAATGATATAATTCATGCTTTTGTGATTGTCGATGAAACTAAAAAT
TTAACTGAAACTCAGATTGAAAATTTTGTTAATTCAAAAGTCATCGATGCAAAGAAACTT
CGTGGTGGCGTTCATTTTGTTAAATCTTTTGAATTAGGATTAACTGGAAAAGTTAGCAGA
ATGAAAATGAGGAAAATTGCTGAAGAAAAATTCACATGA
>g1084.t1 Gene=g1084 Length=532
MFKSTYDKATKVWSGPKVPPIFNPDQNLGQLIVKVLEQTPDAETQISADTNVSVTCGEMR
ERILKFAVHLNNFGLKQGDVIGVVAGNTENIAPVVFACFLLGLPVNPLAPIMIESDIVQM
FSKTKPKMIFCDEKNLRTVQNALDMMKSEAKIYTVMEKVDGYECVTEILKNDIKFEDLIY
PEVDPNSTLMIICSSGSTGFPKGILKSHKNFLTEFPTILHYNPEGQNRTFLFSAIFWLSG
ILFLILGTLYKFTRIITTESFDAQLMVDIIKKYKVTHAFTPPFSILNILQLNNLEQLSSI
KYWMTGGAIVDKNLCEKFKKFLPNGIIGTAYGSSEQGVITENKNQNRYGSVGVVVNNTSV
KIIDENGKSLDNNQQGEICGKISTKFLDYVGDHKTYLESFDGDWFKTGDIGYFDDDGYLH
VIDRKKELLKFNNYQVTPSELEAIVNEIDGIISSCVVGVLNKSSGNDIIHAFVIVDETKN
LTETQIENFVNSKVIDAKKLRGGVHFVKSFELGLTGKVSRMKMRKIAEEKFT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g1084.t1 | Gene3D | G3DSA:3.40.50.12780 | - | 10 | 427 | 5.2E-92 |
| 8 | g1084.t1 | Gene3D | G3DSA:3.30.300.30 | - | 428 | 531 | 2.1E-15 |
| 2 | g1084.t1 | PANTHER | PTHR24096:SF353 | GH16244P-RELATED | 4 | 528 | 8.2E-137 |
| 3 | g1084.t1 | PANTHER | PTHR24096 | LONG-CHAIN-FATTY-ACID–COA LIGASE | 4 | 528 | 8.2E-137 |
| 1 | g1084.t1 | Pfam | PF00501 | AMP-binding enzyme | 36 | 431 | 3.7E-70 |
| 10 | g1084.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 229 | - |
| 11 | g1084.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 230 | 250 | - |
| 9 | g1084.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 251 | 532 | - |
| 6 | g1084.t1 | ProSitePatterns | PS00455 | Putative AMP-binding domain signature. | 191 | 202 | - |
| 5 | g1084.t1 | SUPERFAMILY | SSF56801 | Acetyl-CoA synthetase-like | 12 | 529 | 2.49E-98 |
| 4 | g1084.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 230 | 252 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed