Gene loci information

Transcript annotation

  • This transcript has been annotated as Alpha-soluble NSF attachment protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10858 g10858.t14 TSS g10858.t14 12305462 12305462
chr_1 g10858 g10858.t14 isoform g10858.t14 12305534 12307276
chr_1 g10858 g10858.t14 exon g10858.t14.exon1 12305534 12305625
chr_1 g10858 g10858.t14 cds g10858.t14.CDS1 12305534 12305625
chr_1 g10858 g10858.t14 exon g10858.t14.exon2 12305767 12305950
chr_1 g10858 g10858.t14 cds g10858.t14.CDS2 12305767 12305950
chr_1 g10858 g10858.t14 exon g10858.t14.exon3 12306008 12306139
chr_1 g10858 g10858.t14 cds g10858.t14.CDS3 12306008 12306139
chr_1 g10858 g10858.t14 exon g10858.t14.exon4 12306252 12306576
chr_1 g10858 g10858.t14 cds g10858.t14.CDS4 12306252 12306576
chr_1 g10858 g10858.t14 exon g10858.t14.exon5 12306651 12307276
chr_1 g10858 g10858.t14 cds g10858.t14.CDS5 12306651 12306652
chr_1 g10858 g10858.t14 TTS g10858.t14 12307710 12307710

Sequences

>g10858.t14 Gene=g10858 Length=1359
ATGGCCGATAATGAGCAAAAAGCATTACAACTTATAGCTGAGGCCGAGAAGAAACTCAAT
TCGTCAAAAGGATTTCTTGGGTCTCTTTTTGGTGGCGCTAATAAAGTTGACGATGCCATA
GAATGTTATCACCGTGCTGCGAATATGTTTAAAATGGCCAAAAAATGGCAACAAGCAGGA
TCTGCTTTTTGTGAAGCAGCAAATTTACATGCGAAAGCTGGAAGTCGTCATGATGCAGCA
ACGAATTATGTTGATGCATCAAATTGCTACAAAAAGGTTGATCCAAATGAAGCAGTGGCA
TGTTTGCTCAAAGCAATTGATATTTACACAGATATGGGTCGGTTTACAATGGCTGCAAAA
CATCATCAAACAATAGCTGAAATGTTTGAAAATGAAGCAAATGATTTGCATCGTGCAGTG
CAACATTACGAGCAAGCAGCTGATTATTTCAAGGGCGAAGAGTCAACAAGTTCGGCAAAC
AAATGCATGCTAAAAGTTGCACAGTATGCAGCACAATTAGAAGATTATGAAAAGGCAATC
CAAATTTACGAATCTGTAGCCGGTTCATGTCTTGATAGCTCTCTACTCAAGTACAGCGCA
AAAGAGTACTTCTTCCGTGCTTCATTGTGTCATTTGAGTGTAGATTTGCTTAATGCTCAA
CACGCATTAGACAAGTATGCATCACAATATCCAGCATTTCAAGATTCACGTGAATTTAAA
TTGGTCAAGGTATAAGAGCAAAACATCGATGGTTATACAGAAGCTGTAAAAGATTATGAC
AGCATTTCTCGTTTAGATCAGTGGTACACTACAATTTTATTGCGTATCAAAAAGCAACAT
AATGATAATCCAGATTTACGATAAATTGTCAATACTTGCTCTAGTTCTCCCATTGCGAAA
CTCAATGATGCAAAAGATGAAGAAGGTGAAAGAATTCCATTTTATGTCGTTTTTTTAAAA
TTTAGCATAAAAGAGTAAAATTCCTAATCGTTTTTAGGAGTAAATTTTTGTCCATCAATA
ACTTACTTACACATTATTATTATTTTTTTGTTGTAAACTATAAACGCATGCAAAAAAATT
AAAAAAAAACTAACGAAAAAATAAAATTATTACAATGATACATTTCTGATATATCTCTAG
TGATAAGAACTCTTTAAAAAGAAGAAATTGAAAAATATTTAAATATAATATGATGTTATA
GCTTATTTGATGCTGTTATTTTTTTATTTGATCATTAAAAGTTTTAAGTTAAAAATGAGT
CATGGGTTTTCTCACTTTTTTATTCATATTTTTTGTAACTAAAACGTTGCATTTTGTTTA
TCTCGAATGTGTACATACACATAGTCGTTGTGCATAAAT

>g10858.t14 Gene=g10858 Length=244
MADNEQKALQLIAEAEKKLNSSKGFLGSLFGGANKVDDAIECYHRAANMFKMAKKWQQAG
SAFCEAANLHAKAGSRHDAATNYVDASNCYKKVDPNEAVACLLKAIDIYTDMGRFTMAAK
HHQTIAEMFENEANDLHRAVQHYEQAADYFKGEESTSSANKCMLKVAQYAAQLEDYEKAI
QIYESVAGSCLDSSLLKYSAKEYFFRASLCHLSVDLLNAQHALDKYASQYPAFQDSREFK
LVKV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g10858.t14 CDD cd15832 SNAP 7 243 5.20312E-109
12 g10858.t14 Coils Coil Coil 126 146 -
13 g10858.t14 Coils Coil Coil 166 186 -
11 g10858.t14 Gene3D G3DSA:1.25.40.10 - 6 244 5.5E-99
2 g10858.t14 PANTHER PTHR13768 SOLUBLE NSF ATTACHMENT PROTEIN SNAP 4 243 1.3E-105
3 g10858.t14 PANTHER PTHR13768:SF23 ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 4 243 1.3E-105
5 g10858.t14 PRINTS PR00448 NSF attachment protein signature 35 54 8.0E-55
9 g10858.t14 PRINTS PR00448 NSF attachment protein signature 98 115 8.0E-55
7 g10858.t14 PRINTS PR00448 NSF attachment protein signature 127 144 8.0E-55
4 g10858.t14 PRINTS PR00448 NSF attachment protein signature 160 183 8.0E-55
8 g10858.t14 PRINTS PR00448 NSF attachment protein signature 191 210 8.0E-55
6 g10858.t14 PRINTS PR00448 NSF attachment protein signature 231 244 8.0E-55
1 g10858.t14 Pfam PF14938 Soluble NSF attachment protein, SNAP 7 243 9.2E-90
10 g10858.t14 SUPERFAMILY SSF48452 TPR-like 6 242 8.72E-59

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006886 intracellular protein transport BP
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values