Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Serine protease inhibitor 77Ba.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10859 g10859.t3 isoform g10859.t3 12309418 12310610
chr_1 g10859 g10859.t3 exon g10859.t3.exon1 12309418 12309425
chr_1 g10859 g10859.t3 exon g10859.t3.exon2 12309488 12310234
chr_1 g10859 g10859.t3 cds g10859.t3.CDS1 12309905 12310234
chr_1 g10859 g10859.t3 exon g10859.t3.exon3 12310285 12310410
chr_1 g10859 g10859.t3 cds g10859.t3.CDS2 12310285 12310410
chr_1 g10859 g10859.t3 exon g10859.t3.exon4 12310545 12310610
chr_1 g10859 g10859.t3 cds g10859.t3.CDS3 12310545 12310610
chr_1 g10859 g10859.t3 TTS g10859.t3 12310722 12310722
chr_1 g10859 g10859.t3 TSS g10859.t3 NA NA

Sequences

>g10859.t3 Gene=g10859 Length=947
GCTTTAAATAAAAGTGCGTCAGATGTAAGCATTCGAAAATTTGCTGCTATGATAGGCGAT
AAAAATCGACCGATCGGACGCGAATATGAAGACAATGTAGAAAAGATTTATGATGTAGAC
TATATTCCTGTAAATTTCCAAGAAGTAGAAAAAACATTACGTGAAGTAAATAACCGAGTT
TCTCAAAGTACAAATGGACAAATAACTGACGCCATCTCACGTGATGACGTACTTAAAGTA
AGTAATTCCCTTTTATGAAATTTTAAAAACAATTTAATTCATTTGGATTTTCTAAACAGG
CGCAATTAATACTGTTGGCAGGTGTCCACTTTAAAGGAAATTGGAAAAATGTCTTCAATA
CCACTTTCACAAAGAATGAACCATTTTATGATATTCATCAGGAGAAAGAACTTGGAAGAG
TTAATATGATGTTCCAAAGAGGTCCATTTGCATATGCTGCTAATCAAAATCTTGGTTGTT
ATCTACTTGAATTACCCTATGGAGCTGACCGTGAATATGCAGAAAGAAATAATTTACCAG
AAGGCACTGATGATCGAATTTCAATGATTGTTGTGTTACCTAAGCGTGGTCTTTCGTTAG
TTGATGCCATCGATAACGTTAACAAATATGGAATAAAGAGCTTATTGTTTGAATTGAAAA
AAGCTAAAGATGAATTTGAAGATGAAGAAGTCGAAGTTCATCTTCCACGTTTTGAAATAG
ACACATCACTCAGTTTGAAGGATACTTTACAAAGCATGGGTATAAATGATATTTTTGAGA
ATTCGGCAAACTTGTCAGGAATTAATAACAACTACTATGTGTCATCAATTCTTCACAAGA
CTAAAATTCGTGTGGATGAAAAAGGAACTGAAGCATCGGCAATTGTTGATAAAGCTACGA
GACTTATTCTTTTTGCTGGTGTATATAGAAATCCTACACTTTTTTAA

>g10859.t3 Gene=g10859 Length=173
MMFQRGPFAYAANQNLGCYLLELPYGADREYAERNNLPEGTDDRISMIVVLPKRGLSLVD
AIDNVNKYGIKSLLFELKKAKDEFEDEEVEVHLPRFEIDTSLSLKDTLQSMGINDIFENS
ANLSGINNNYYVSSILHKTKIRVDEKGTEASAIVDKATRLILFAGVYRNPTLF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g10859.t3 Coils Coil Coil 70 90 -
7 g10859.t3 Gene3D G3DSA:2.30.39.10 - 1 150 2.8E-37
8 g10859.t3 Gene3D G3DSA:3.30.497.10 Antithrombin 99 153 2.8E-37
2 g10859.t3 PANTHER PTHR11461:SF162 SERINE PROTEASE INHIBITOR 77BA 1 30 5.1E-34
4 g10859.t3 PANTHER PTHR11461 SERINE PROTEASE INHIBITOR, SERPIN 1 30 5.1E-34
3 g10859.t3 PANTHER PTHR11461:SF162 SERINE PROTEASE INHIBITOR 77BA 36 149 5.1E-34
5 g10859.t3 PANTHER PTHR11461 SERINE PROTEASE INHIBITOR, SERPIN 36 149 5.1E-34
1 g10859.t3 Pfam PF00079 Serpin (serine protease inhibitor) 1 154 5.4E-32
6 g10859.t3 SUPERFAMILY SSF56574 Serpins 1 170 1.7E-38

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005615 extracellular space CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values