Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Serine protease inhibitor 77Ba.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10859 g10859.t8 isoform g10859.t8 12309494 12310610
chr_1 g10859 g10859.t8 exon g10859.t8.exon1 12309494 12309720
chr_1 g10859 g10859.t8 exon g10859.t8.exon2 12309779 12310234
chr_1 g10859 g10859.t8 cds g10859.t8.CDS1 12309905 12310234
chr_1 g10859 g10859.t8 exon g10859.t8.exon3 12310285 12310452
chr_1 g10859 g10859.t8 cds g10859.t8.CDS2 12310285 12310452
chr_1 g10859 g10859.t8 exon g10859.t8.exon4 12310515 12310610
chr_1 g10859 g10859.t8 cds g10859.t8.CDS3 12310515 12310610
chr_1 g10859 g10859.t8 TTS g10859.t8 12310722 12310722
chr_1 g10859 g10859.t8 TSS g10859.t8 NA NA

Sequences

>g10859.t8 Gene=g10859 Length=947
TGCGTCAGATGTAAGCATTCGAAAATTTGCTGCTATGATAGGCGATAAAAATCGACCGAT
CGGACGCGAATATGAAGACAATGTAGAAAAGATTTATGATGTAGACTATATTCCTGTAAA
TTTCCAAGAAGTAGAAAAAACATTACGTGAAGTAAATAACCGAGTTTCTCAAAGTACAAA
TGGACAAATAACTGACGCCATCTCACGTGATGACGTACTTAAAGTAAGCGCAATTAATAC
TGTTGGCAGGTGTCCACTTTAAAGGAAATTGGAAAAATGTCTTCAATACCACTTTCACAA
AGAATGAACCATTTTATGATATTCATCAGGAGAAAGAACTTGGAAGAGTTAATATGATGT
TCCAAAGAGGTCCATTTGCATATGCTGCTAATCAAAATCTTGGTTGTTATCTACTTGAAT
TACCCTATGGAGCTGACCGTGAATATGCAGAAAGAAATAATTTACCAGAAGGCACTGATG
ATCGAATTTCAATGATTGTTGTGTTACCTAAGCGTGGTCTTTCGTTAGTTGATGCCATCG
ATAACGTTAACAAATATGGAATAAAGAGCTTATTGTTTGAATTGAAAAAAGCTAAAGATG
AATTTGAAGATGAAGAAGTCGAAGTTCATCTTCCACGTTTTGAAATAGACACATCACTCA
GTTTGAAGGATACTTTACAAAGCATGGGTATAAATGATATTTTTGAGAATTCGGCAAACT
TGTCAGGAATTAATAACAACTACTATGTGTCATCAATTCTTCACAAGACTAAAATTCGTG
TGGATGAAAAAGGAACTGAAGCATCGGCAGTGACAACTTCAATTTTTGCTAACAAAGCTA
CACCACCGAAGTTCCATGCTAACAGACCCTTCTTTTACTTTATTGTTGATAAAGCTACGA
GACTTATTCTTTTTGCTGGTGTATATAGAAATCCTACACTTTTTTAA

>g10859.t8 Gene=g10859 Length=197
MMFQRGPFAYAANQNLGCYLLELPYGADREYAERNNLPEGTDDRISMIVVLPKRGLSLVD
AIDNVNKYGIKSLLFELKKAKDEFEDEEVEVHLPRFEIDTSLSLKDTLQSMGINDIFENS
ANLSGINNNYYVSSILHKTKIRVDEKGTEASAVTTSIFANKATPPKFHANRPFFYFIVDK
ATRLILFAGVYRNPTLF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g10859.t8 Coils Coil Coil 70 90 -
7 g10859.t8 Gene3D G3DSA:2.30.39.10 - 1 194 8.7E-52
8 g10859.t8 Gene3D G3DSA:3.30.497.10 Antithrombin 96 143 8.7E-52
2 g10859.t8 PANTHER PTHR11461:SF162 SERINE PROTEASE INHIBITOR 77BA 1 196 6.4E-51
3 g10859.t8 PANTHER PTHR11461 SERINE PROTEASE INHIBITOR, SERPIN 1 196 6.4E-51
1 g10859.t8 Pfam PF00079 Serpin (serine protease inhibitor) 1 194 2.9E-47
6 g10859.t8 ProSitePatterns PS00284 Serpins signature. 167 177 -
5 g10859.t8 SMART SM00093 serpin2 1 194 4.6E-4
4 g10859.t8 SUPERFAMILY SSF56574 Serpins 1 194 6.02E-51

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005615 extracellular space CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed