Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Serine protease inhibitor 77Ba.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10859 g10859.t9 isoform g10859.t9 12309494 12310610
chr_1 g10859 g10859.t9 exon g10859.t9.exon1 12309494 12309716
chr_1 g10859 g10859.t9 cds g10859.t9.CDS1 12309528 12309716
chr_1 g10859 g10859.t9 exon g10859.t9.exon2 12309779 12310234
chr_1 g10859 g10859.t9 cds g10859.t9.CDS2 12309779 12310234
chr_1 g10859 g10859.t9 exon g10859.t9.exon3 12310285 12310452
chr_1 g10859 g10859.t9 cds g10859.t9.CDS3 12310285 12310452
chr_1 g10859 g10859.t9 exon g10859.t9.exon4 12310529 12310610
chr_1 g10859 g10859.t9 cds g10859.t9.CDS4 12310529 12310552
chr_1 g10859 g10859.t9 TTS g10859.t9 12310722 12310722
chr_1 g10859 g10859.t9 TSS g10859.t9 NA NA

Sequences

>g10859.t9 Gene=g10859 Length=929
TGCGTCAGATGTAAGCATTCGAAAATTTGCTGCTATGATAGGCGATAAAAATCGACCGAT
CGGACGCGAATATGAAGACAATGTAGAAAAGATTTATGATGTAGACTATATTCCTGTAAA
TTTCCAAGAAGTAGAAAAAACATTACGTGAAGTAAATAACCGAGTTTCTCAAAGTACAAA
TGGACAAATAACTGACGCCATCTCACGTGATGACGTACTTAAAGCGCAATTAATACTGTT
GGCAGGTGTCCACTTTAAAGGAAATTGGAAAAATGTCTTCAATACCACTTTCACAAAGAA
TGAACCATTTTATGATATTCATCAGGAGAAAGAACTTGGAAGAGTTAATATGATGTTCCA
AAGAGGTCCATTTGCATATGCTGCTAATCAAAATCTTGGTTGTTATCTACTTGAATTACC
CTATGGAGCTGACCGTGAATATGCAGAAAGAAATAATTTACCAGAAGGCACTGATGATCG
AATTTCAATGATTGTTGTGTTACCTAAGCGTGGTCTTTCGTTAGTTGATGCCATCGATAA
CGTTAACAAATATGGAATAAAGAGCTTATTGTTTGAATTGAAAAAAGCTAAAGATGAATT
TGAAGATGAAGAAGTCGAAGTTCATCTTCCACGTTTTGAAATAGACACATCACTCAGTTT
GAAGGATACTTTACAAAGCATGGGTATAAATGATATTTTTGAGAATTCGGCAAACTTGTC
AGGAATTAATAACAACTACTATGTGTCATCAATTCTTCACAAGACTAAAATTCGTGTGGA
TGAAAAAGGAACTGAAGCATCGGCAGTGACAACTTCAATTTTTGCTAACAAAGCTACACC
ACCGAAGACCCTTCTTTTACTTTATTGTTGATAAAGCTACGAGACTTATTCTTTTTGCTG
GTGTATATAGAAATCCTACACTTTTTTAA

>g10859.t9 Gene=g10859 Length=278
MIGDKNRPIGREYEDNVEKIYDVDYIPVNFQEVEKTLREVNNRVSQSTNGQITDAISRDD
VLKAQLILLAGVHFKGNWKNVFNTTFTKNEPFYDIHQEKELGRVNMMFQRGPFAYAANQN
LGCYLLELPYGADREYAERNNLPEGTDDRISMIVVLPKRGLSLVDAIDNVNKYGIKSLLF
ELKKAKDEFEDEEVEVHLPRFEIDTSLSLKDTLQSMGINDIFENSANLSGINNNYYVSSI
LHKTKIRVDEKGTEASAVTTSIFANKATPPKTLLLLYC

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g10859.t9 Coils Coil Coil 175 195 -
9 g10859.t9 Gene3D G3DSA:3.30.497.10 Antithrombin 3 258 1.6E-64
8 g10859.t9 Gene3D G3DSA:2.30.39.10 - 74 255 1.6E-64
2 g10859.t9 PANTHER PTHR11461:SF162 SERINE PROTEASE INHIBITOR 77BA 2 135 6.6E-68
4 g10859.t9 PANTHER PTHR11461 SERINE PROTEASE INHIBITOR, SERPIN 2 135 6.6E-68
3 g10859.t9 PANTHER PTHR11461:SF162 SERINE PROTEASE INHIBITOR 77BA 141 273 6.6E-68
5 g10859.t9 PANTHER PTHR11461 SERINE PROTEASE INHIBITOR, SERPIN 141 273 6.6E-68
1 g10859.t9 Pfam PF00079 Serpin (serine protease inhibitor) 3 269 1.4E-59
7 g10859.t9 SMART SM00093 serpin2 1 270 1.2E-9
6 g10859.t9 SUPERFAMILY SSF56574 Serpins 3 271 2.23E-61

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005615 extracellular space CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed