General information for g1086.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Luciferin 4-monooxygenase.
Parent gene
- The parent gene g1086 is located on chr_3: 8063978..8066481 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1086 | g1086.t1 | TSS | g1086.t1 | 8063942 | 8063942 |
| chr_3 | g1086 | g1086.t1 | isoform | g1086.t1 | 8063978 | 8065646 |
| chr_3 | g1086 | g1086.t1 | exon | g1086.t1.exon1 | 8063978 | 8065060 |
| chr_3 | g1086 | g1086.t1 | cds | g1086.t1.CDS1 | 8063978 | 8065060 |
| chr_3 | g1086 | g1086.t1 | exon | g1086.t1.exon2 | 8065122 | 8065646 |
| chr_3 | g1086 | g1086.t1 | cds | g1086.t1.CDS2 | 8065122 | 8065646 |
| chr_3 | g1086 | g1086.t1 | TTS | g1086.t1 | 8065758 | 8065758 |
Sequences
>g1086.t1 Gene=g1086 Length=1608
ATGTTCAAACCAACATACGATAAAGCTACAAAAGTCTGGAGCGGTCCAAAAGTACCACCA
ATCTTCAATCCTGATCAAAATCTTGGTCAATTAATTGTGAAAGTTCTTGAGCAAACTCCA
GATGCTGTGACACAAATTTCAGCTGATACAAATGTTTCAGTAACTTGTGGTGAAATGCGA
GAAAGAATTTTGAAATTCGCTGTTCATTTGAATAATCTTGGACTTAAACAAGGCGATGTT
ATTGGTGTTGTAGCTGGAAATACTGAAAATATTGCTCCAACTGTTTTTGCTTGCTTCTTT
CTCGGACTTCCTGTTAATCCGCTTACTCCGGTTATGGTCAAAAGCAATATTGTACAAATG
TATTCGAAAACTAAACCAAAATTGATCTTTTGTGATGAGAAAAATTTAAAAATAGTTCAA
AATTCAGTAGACATGATGAAAAGTGAAGCAAAAATTTATACAGTGATGGAAAAAGTTGAA
AATTATGAATGTGTAACTGAAATACTTAAAGAAAATGTTAATTTTGACGAGTTCATTTTT
CCTAAAGTTGATCCAAACACAACATTAATAATTCTTTGCTCATCTGGAACATCGGGACCT
TTGAAAGGAATTTGCAAATCACATCGTGAAGTCTTATCAGCAATGTTTCCACTCTACGAT
CGTTATTTGATGAATAATCCAAGATTTTACGTCATTTCTGCAGTTTTCTGGGCAAGTGGT
TTTCATTTTCTTTTGATGACTTCTTTATTCAATTATACAAGAATTATAACAGCTGAACCA
TATGAGCCTAAACGTTTTGTTGACATTTTAGTGAAATATAAAATAAATTCCTTAATGACG
CCACCATTTATGATTATCAATCTCGTACAAAATGACGCATTTCAAATTCTAGAACATATG
AGGTTGTGGTTTTTCGCTGGTGCAATTGTTACAAAAGAAATTTTTAAAAAACTTCGACCT
TTTATTCCAAATGCAATGTTTGTAAATGGTTATGGAATTTCTGAAGTTAATTTACTTGCT
ATAAATTATGAAATGAAAAAACCAGAAAGTAGTGGATATCCTGTTCAAAATGTTGATATT
ATGATTGCTGATGATGAAGGAAATGCTTTGGAAAATTATCAAAATGGTGAAATTTACGCA
AAAGTTCCAATTAGATTTACAGAATATTTCGGTGAACCAGAAGTGACTGAAAAATCATTT
CATGGTGAATGGTTTAAAACAGGCGATGTTGGACATTTTGATGATGAAGGATTTTTGTAC
GTTGTTGAACGTAAGAAAGACATGATAAGATTTCAAGGTTATCATATTATTCCATCAGAA
ATTGAAGCAATTATTAATGAAATAAAAGGAGTTATGAGCAGTTGTGTTGTTGGTGTTGAA
GATAAAATAACTGGAGTTGATTTTATTCATGCTTTTGTGATTGTCGATGAATTTTGTAAA
ATAACAGAACAAGAAATTGAAGATTATGTTAGAAAAAGAGTCATTGATCAAAAAAGAATT
CGAGGTGGTGTTCATTTTGTTAAAAGTTTTCCTCTAGGAATCACTGGAAAAGTTGATAGA
AAGAAAGTTAAGGAAATAGCTGAGAATTTTTCAAAAGAAGCGACATAA
>g1086.t1 Gene=g1086 Length=535
MFKPTYDKATKVWSGPKVPPIFNPDQNLGQLIVKVLEQTPDAVTQISADTNVSVTCGEMR
ERILKFAVHLNNLGLKQGDVIGVVAGNTENIAPTVFACFFLGLPVNPLTPVMVKSNIVQM
YSKTKPKLIFCDEKNLKIVQNSVDMMKSEAKIYTVMEKVENYECVTEILKENVNFDEFIF
PKVDPNTTLIILCSSGTSGPLKGICKSHREVLSAMFPLYDRYLMNNPRFYVISAVFWASG
FHFLLMTSLFNYTRIITAEPYEPKRFVDILVKYKINSLMTPPFMIINLVQNDAFQILEHM
RLWFFAGAIVTKEIFKKLRPFIPNAMFVNGYGISEVNLLAINYEMKKPESSGYPVQNVDI
MIADDEGNALENYQNGEIYAKVPIRFTEYFGEPEVTEKSFHGEWFKTGDVGHFDDEGFLY
VVERKKDMIRFQGYHIIPSEIEAIINEIKGVMSSCVVGVEDKITGVDFIHAFVIVDEFCK
ITEQEIEDYVRKRVIDQKRIRGGVHFVKSFPLGITGKVDRKKVKEIAENFSKEAT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g1086.t1 | Gene3D | G3DSA:3.40.50.12780 | - | 10 | 427 | 3.1E-85 |
| 9 | g1086.t1 | Gene3D | G3DSA:3.30.300.30 | - | 428 | 532 | 6.4E-21 |
| 3 | g1086.t1 | PANTHER | PTHR24096:SF353 | GH16244P-RELATED | 4 | 529 | 4.7E-128 |
| 4 | g1086.t1 | PANTHER | PTHR24096 | LONG-CHAIN-FATTY-ACID–COA LIGASE | 4 | 529 | 4.7E-128 |
| 2 | g1086.t1 | Pfam | PF00501 | AMP-binding enzyme | 36 | 430 | 1.5E-65 |
| 1 | g1086.t1 | Pfam | PF13193 | AMP-binding enzyme C-terminal domain | 440 | 517 | 1.3E-10 |
| 10 | g1086.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 228 | - |
| 12 | g1086.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 229 | 250 | - |
| 11 | g1086.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 251 | 535 | - |
| 7 | g1086.t1 | ProSitePatterns | PS00455 | Putative AMP-binding domain signature. | 191 | 202 | - |
| 6 | g1086.t1 | SUPERFAMILY | SSF56801 | Acetyl-CoA synthetase-like | 24 | 530 | 9.42E-101 |
| 5 | g1086.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 229 | 251 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed