General information for g1086.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Luciferin 4-monooxygenase.
Parent gene
- The parent gene g1086 is located on chr_3: 8063978..8066481 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1086 | g1086.t3 | TSS | g1086.t3 | 8063942 | 8063942 |
| chr_3 | g1086 | g1086.t3 | isoform | g1086.t3 | 8063978 | 8066481 |
| chr_3 | g1086 | g1086.t3 | exon | g1086.t3.exon1 | 8063978 | 8064692 |
| chr_3 | g1086 | g1086.t3 | cds | g1086.t3.CDS1 | 8063978 | 8064692 |
| chr_3 | g1086 | g1086.t3 | exon | g1086.t3.exon2 | 8064789 | 8065060 |
| chr_3 | g1086 | g1086.t3 | cds | g1086.t3.CDS2 | 8064789 | 8065060 |
| chr_3 | g1086 | g1086.t3 | exon | g1086.t3.exon3 | 8065122 | 8066481 |
| chr_3 | g1086 | g1086.t3 | cds | g1086.t3.CDS3 | 8065122 | 8065646 |
| chr_3 | g1086 | g1086.t3 | TTS | g1086.t3 | 8066476 | 8066476 |
Sequences
>g1086.t3 Gene=g1086 Length=2347
ATGTTCAAACCAACATACGATAAAGCTACAAAAGTCTGGAGCGGTCCAAAAGTACCACCA
ATCTTCAATCCTGATCAAAATCTTGGTCAATTAATTGTGAAAGTTCTTGAGCAAACTCCA
GATGCTGTGACACAAATTTCAGCTGATACAAATGTTTCAGTAACTTGTGGTGAAATGCGA
GAAAGAATTTTGAAATTCGCTGTTCATTTGAATAATCTTGGACTTAAACAAGGCGATGTT
ATTGGTGTTGTAGCTGGAAATACTGAAAATATTGCTCCAACTGTTTTTGCTTGCTTCTTT
CTCGGACTTCCTGTTAATCCGCTTACTCCGGTTATGGTCAAAAGCAATATTGTACAAATG
TATTCGAAAACTAAACCAAAATTGATCTTTTGTGATGAGAAAAATTTAAAAATAGTTCAA
AATTCAGTAGACATGATGAAAAGTGAAGCAAAAATTTATACAGTGATGGAAAAAGTTGAA
AATTATGAATGTGTAACTGAAATACTTAAAGAAAATGTTAATTTTGACGAGTTCATTTTT
CCTAAAGTTGATCCAAACACAACATTAATAATTCTTTGCTCATCTGGAACATCGGGACCT
TTGAAAGGAATTTGCAAATCACATCGTGAAGTCTTATCAGCAATGTTTCCACTCTACGAT
CGTTATTTGATGAATAATCCAAGATTTTACGTCATTTCTGCAGTTTTCTGGGCAATGAAA
TATAAAATAAATTCCTTAATGACGCCACCATTTATGATTATCAATCTCGTACAAAATGAC
GCATTTCAAATTCTAGAACATATGAGGTTGTGGTTTTTCGCTGGTGCAATTGTTACAAAA
GAAATTTTTAAAAAACTTCGACCTTTTATTCCAAATGCAATGTTTGTAAATGGTTATGGA
ATTTCTGAAGTTAATTTACTTGCTATAAATTATGAAATGAAAAAACCAGAAAGTAGTGGA
TATCCTGTTCAAAATGTTGATATTATGATTGCTGATGATGAAGGAAATGCTTTGGAAAAT
TATCAAAATGGTGAAATTTACGCAAAAGTTCCAATTAGATTTACAGAATATTTCGGTGAA
CCAGAAGTGACTGAAAAATCATTTCATGGTGAATGGTTTAAAACAGGCGATGTTGGACAT
TTTGATGATGAAGGATTTTTGTACGTTGTTGAACGTAAGAAAGACATGATAAGATTTCAA
GGTTATCATATTATTCCATCAGAAATTGAAGCAATTATTAATGAAATAAAAGGAGTTATG
AGCAGTTGTGTTGTTGGTGTTGAAGATAAAATAACTGGAGTTGATTTTATTCATGCTTTT
GTGATTGTCGATGAATTTTGTAAAATAACAGAACAAGAAATTGAAGATTATGTTAGAAAA
AGAGTCATTGATCAAAAAAGAATTCGAGGTGGTGTTCATTTTGTTAAAAGTTTTCCTCTA
GGAATCACTGGAAAAGTTGATAGAAAGAAAGTTAAGGAAATAGCTGAGAATTTTTCAAAA
GAAGCGACATAAGAATATTAAAAGAAATTCTAATATTTTCTGATAACACTTAAGCTCTTG
TCATTTTCAATATGTCAACAAAATTTTTTATACACACAATGAAATAAATAATCTAACACT
TTAACTTAAGTTTTATTATTAATCTAAAAATAAAACCACGTTTTACTGATAATTTTGTGG
AATTCTTATGATAAGATATTGACAAGTTTCATTTGTTTATGATTTTCATGAGTTAAATAC
ATTTAATAGAAATTTCATTCATTAAAATGACATTTTTTAAATCAAAGAATCAAAACTTTT
TTAATCTTTAAAAGTAAACTTAAGAGCTTCATTATCTTTTATTGTTGATAAAATGTCTTT
TTATCTTTATGAGATAGAAAACATTTAGCAAACAATTCAAAACCAGCATAGCATATAGCA
AAGAAAATCTTATCAAAGAAGAAAAATCACAATTCATCACAGATGTGCTGAAACTCTTCA
CTCTTTACTTCAATCACTTTAACTCTTAACATTCTATTGTGACAAGCATAAAAAGGATGA
AAGCATCAATTCCACAGCCAGCAGATGCGAATAATGTTACAAAATAGAATCACAGTGTGA
ACATGAAGAAAACTTTTTATTGATGAAAAAGAAATTTGCAAATATAGCAAATGTGCGCTA
TGAAAGATGAATAGATTTGATCATGCATGCGTGTGATAAGCTTTGACATTGTTCAGGAAA
AGTTTTTTAAATGTATTTTATATTATGTATACAATGACCTACATTACAAAATATTTTGTT
ATTTGATAATGATAAGAATGATGAATCATGAATAAAGTAAAAAATATGAAGATCATTGTA
CTAAAAA
>g1086.t3 Gene=g1086 Length=503
MFKPTYDKATKVWSGPKVPPIFNPDQNLGQLIVKVLEQTPDAVTQISADTNVSVTCGEMR
ERILKFAVHLNNLGLKQGDVIGVVAGNTENIAPTVFACFFLGLPVNPLTPVMVKSNIVQM
YSKTKPKLIFCDEKNLKIVQNSVDMMKSEAKIYTVMEKVENYECVTEILKENVNFDEFIF
PKVDPNTTLIILCSSGTSGPLKGICKSHREVLSAMFPLYDRYLMNNPRFYVISAVFWAMK
YKINSLMTPPFMIINLVQNDAFQILEHMRLWFFAGAIVTKEIFKKLRPFIPNAMFVNGYG
ISEVNLLAINYEMKKPESSGYPVQNVDIMIADDEGNALENYQNGEIYAKVPIRFTEYFGE
PEVTEKSFHGEWFKTGDVGHFDDEGFLYVVERKKDMIRFQGYHIIPSEIEAIINEIKGVM
SSCVVGVEDKITGVDFIHAFVIVDEFCKITEQEIEDYVRKRVIDQKRIRGGVHFVKSFPL
GITGKVDRKKVKEIAENFSKEAT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g1086.t3 | Gene3D | G3DSA:3.40.50.980 | - | 59 | 209 | 4.1E-30 |
| 10 | g1086.t3 | Gene3D | G3DSA:3.40.50.12780 | - | 223 | 395 | 1.4E-35 |
| 12 | g1086.t3 | Gene3D | G3DSA:3.30.300.30 | - | 396 | 500 | 5.8E-21 |
| 4 | g1086.t3 | PANTHER | PTHR24096:SF353 | GH16244P-RELATED | 4 | 238 | 1.7E-114 |
| 6 | g1086.t3 | PANTHER | PTHR24096 | LONG-CHAIN-FATTY-ACID–COA LIGASE | 4 | 238 | 1.7E-114 |
| 5 | g1086.t3 | PANTHER | PTHR24096:SF353 | GH16244P-RELATED | 240 | 497 | 1.7E-114 |
| 7 | g1086.t3 | PANTHER | PTHR24096 | LONG-CHAIN-FATTY-ACID–COA LIGASE | 240 | 497 | 1.7E-114 |
| 3 | g1086.t3 | Pfam | PF00501 | AMP-binding enzyme | 36 | 239 | 1.1E-24 |
| 2 | g1086.t3 | Pfam | PF00501 | AMP-binding enzyme | 240 | 398 | 1.2E-31 |
| 1 | g1086.t3 | Pfam | PF13193 | AMP-binding enzyme C-terminal domain | 408 | 485 | 1.2E-10 |
| 9 | g1086.t3 | ProSitePatterns | PS00455 | Putative AMP-binding domain signature. | 191 | 202 | - |
| 8 | g1086.t3 | SUPERFAMILY | SSF56801 | Acetyl-CoA synthetase-like | 12 | 497 | 2.35E-92 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed