Gene loci information

Transcript annotation

  • This transcript has been annotated as Serine/threonine-protein kinase STK11.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10880 g10880.t4 TSS g10880.t4 12422869 12422869
chr_1 g10880 g10880.t4 isoform g10880.t4 12423125 12424491
chr_1 g10880 g10880.t4 exon g10880.t4.exon1 12423125 12424107
chr_1 g10880 g10880.t4 cds g10880.t4.CDS1 12423125 12424107
chr_1 g10880 g10880.t4 exon g10880.t4.exon2 12424166 12424491
chr_1 g10880 g10880.t4 cds g10880.t4.CDS2 12424166 12424172
chr_1 g10880 g10880.t4 TTS g10880.t4 12424760 12424760

Sequences

>g10880.t4 Gene=g10880 Length=1309
ATGGAAGAGGATGACAACGTTCCTCTAGATCCACAGCCAGTTGTTGAATGGCTCGATGAC
GATGAAATTGCACAACTGGATTTGCAAACAATATCAAATTCCTTACAATTTAATCGAGTC
TCATCACAGGACATCATTTATCAAAAGAAACAAAAGTGTAAAATGGTCGGTCGTTATGTT
ATGGGAGATAAATTGGGTGAAGGATCTTATGGTAAAGTTAAAGAAGTACTTGACAGCGAA
TCCCTCACACGTAGAGCTGTAAAAATTCTTGCTAAACGAAAACTAAGGCGAATTCCAAAT
GGTGAAATGAATGTTCGCAATGAAATTCTCTTTTTACGTTCCCTTAAGCATAAAAATGTC
GTTGAATTAATTGATGTACTATATAATGAAGAGAAACAGAAAATGTATCTTGTTATGGAA
TATTGTGTGTGTGTTCTGCAAGAGCTTTTAGCATCTGCCCCTGAATCAAAATTACCATTA
TTTCAAGCGCATAAATATTTTGTTCAGCTTATCGATGGACTTCAATATTTACACGGACAA
GGTGTAATTCATAGTGATATAAAGCCAGGAAATTTATTACTTACGCTCGATGACACGCTA
AAAATATCAGATTTTGGTGTGACAGAAAAATTAGACCCTTTTGCGCCTGATGACACATGT
ACTAAAGGTCAAGGTTCGCCTGCTTTTCAACCGCCAGAAATTGCCAATGGACATGACTCA
TTTTCTGGTTTCAAAGCTGATATATGGAGTACAGGTGTTACACTATTTAATATCACGACT
GGTGCGTATCCATTCGAAGGTGATAACATTTATCGGCTGTTGGAGAACATTGGCAAGGGT
GTATGGTCTGTTCCCGAAGGCTTAGACCCCTTGCTGTCTGATTTACTAGTTAATATGCTA
AGATTCGATTCAAAAGAACGATATACAATTCAACAAATTCGTAATCACACGTGGTTTATG
TCTTCACCAATTAATACAGGTTTGAGATAGTGTTCCTATTCCACCTCTACAAGGAAATGC
TTTGAGAAGTTCGACAGTGCTGCCTTATTTAGAATCTTATCACTATGAAAGTCGACAAAA
CAATGTATACTTCACAGAGCATGACCTGAATGAAGCTGAAGAAATGGCACGACAACAAGA
GACATCATCATCATCTCAAAATATGAGAATTAGTAAAAATAATAGTATTACTAACGAGGA
AGCGTTTACAACAAGAGCATCGTCTGACTTAAACAAAAAACGACGGACGAAAAAGAAATT
TATATCGTGTATTAGTGTGAAAAAATTAACTCATTGTCGTCAATCTTAA

>g10880.t4 Gene=g10880 Length=329
MEEDDNVPLDPQPVVEWLDDDEIAQLDLQTISNSLQFNRVSSQDIIYQKKQKCKMVGRYV
MGDKLGEGSYGKVKEVLDSESLTRRAVKILAKRKLRRIPNGEMNVRNEILFLRSLKHKNV
VELIDVLYNEEKQKMYLVMEYCVCVLQELLASAPESKLPLFQAHKYFVQLIDGLQYLHGQ
GVIHSDIKPGNLLLTLDDTLKISDFGVTEKLDPFAPDDTCTKGQGSPAFQPPEIANGHDS
FSGFKADIWSTGVTLFNITTGAYPFEGDNIYRLLENIGKGVWSVPEGLDPLLSDLLVNML
RFDSKERYTIQQIRNHTWFMSSPINTGLR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g10880.t4 CDD cd14119 STKc_LKB1 65 319 1.86747E-168
5 g10880.t4 Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 64 141 2.3E-86
6 g10880.t4 Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 142 319 2.3E-86
2 g10880.t4 PANTHER PTHR44167 OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED 20 322 1.7E-156
3 g10880.t4 PANTHER PTHR44167:SF10 SERINE/THREONINE KINASE 11 20 322 1.7E-156
1 g10880.t4 Pfam PF00069 Protein kinase domain 60 319 1.7E-55
9 g10880.t4 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 65 88 -
8 g10880.t4 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 182 194 -
11 g10880.t4 ProSiteProfiles PS50011 Protein kinase domain profile. 59 319 42.958
10 g10880.t4 SMART SM00220 serkin_6 59 319 4.2E-73
4 g10880.t4 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 50 323 1.12E-71

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0001558 regulation of cell growth BP
GO:0005524 ATP binding MF
GO:0030295 protein kinase activator activity MF
GO:0006468 protein phosphorylation BP
GO:0042593 glucose homeostasis BP
GO:0030010 establishment of cell polarity BP
GO:0004674 protein serine/threonine kinase activity MF
GO:0004672 protein kinase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values