General information for g10883.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Heat shock 70 kDa protein cognate 5.
Parent gene
- The parent gene g10883 is located on chr_1: 12439631..12440188 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10883 | g10883.t5 | TSS | g10883.t5 | 12437137 | 12437137 |
| chr_1 | g10883 | g10883.t5 | isoform | g10883.t5 | 12437248 | 12438393 |
| chr_1 | g10883 | g10883.t5 | exon | g10883.t5.exon1 | 12437248 | 12438215 |
| chr_1 | g10883 | g10883.t5 | cds | g10883.t5.CDS1 | 12437704 | 12438215 |
| chr_1 | g10883 | g10883.t5 | exon | g10883.t5.exon2 | 12438337 | 12438393 |
| chr_1 | g10883 | g10883.t5 | cds | g10883.t5.CDS2 | 12438337 | 12438355 |
| chr_1 | g10883 | g10883.t5 | TTS | g10883.t5 | NA | NA |
Sequences
>g10883.t5 Gene=g10883 Length=1025
ATGTTGTCAGCAACAAAGCATTTATTGAAAAACACAAATATCACACAAACTCTAATGAAC
ACCAGAAATCTTTCGAGTTTGATGAAAAATGTGAGTGCTTTCTTGGTTAATTTCTCGATG
GCAGAATAATGTCGGCTTAAAATTTTTACAATGAAATAATCTTTCTTTATATTTTCTTTG
CAGAATTTCAGTCACTTTAACCGATTGCAATGTAGATATAAGTAAGTTCATATAAAATCA
ATATTGTTCTTTTCACAATCATCGAGAAATTTTTCATCATCATCTATGCGCAAAAAGAAT
TCATCTTTTTTTCTACATTTTTCTATTCTTTTTACATAATCATTACTGCTTCATTCATTT
CTCATAAAAACATTCTCATTTGTCAACAGATCCGAAGGTGTAAAAGGAGCAGTCATTGGT
ATTGACTTAGGAACAACAAATTCATGTGTGGCTGTTATGGAAGGAAAACAGGCCAAGGTC
ATTGAAAACGCAGAAGGTGCAAGAACAACACCATCTCATGTTGCATTTACAAAAGACGGA
GAACGTTTAGTCGGTATGCCAGCAAAGAGACAAGCTGTGACAAATTCTGCAAATACCTTT
TATGCTACAAAACGTTTGATTGGACGCCGATTTGAAGATCCCGAGATTAAGAAAGATATG
AAGAACTTGTCATATAAAGTAGTCAAAGCTTCAAATGGTGATGCATGGGTTCAATCTTCA
GATGGTAAAGTCTATTCGCCTTCACAAATTGGTGCTTTCGTTTTAATGAAAATGAAGGAA
ACTGCAGAAGCATATCTTAATCAACCAGTTAAGAATGCAGTTGTTACTGTTCCTGCATAT
TTTAATGATTCACAACGTCAAGCAACAAAAGATGCTGGTCAAATTTCTGGTCTCAATGTT
TTGCGTGTTATTAACGAACCAACAGCTGCTGCTTTGGCTTATGGCATGGACAAGAGTGAA
GATAAAATAAAGGTGTCTTTGAAGTAAAATCAACAAATGGTGATACAATGTTGGGTGGTG
AGGAT
>g10883.t5 Gene=g10883 Length=176
MEGKQAKVIENAEGARTTPSHVAFTKDGERLVGMPAKRQAVTNSANTFYATKRLIGRRFE
DPEIKKDMKNLSYKVVKASNGDAWVQSSDGKVYSPSQIGAFVLMKMKETAEAYLNQPVKN
AVVTVPAYFNDSQRQATKDAGQISGLNVLRVINEPTAAALAYGMDKSEDKIKVSLK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g10883.t5 | Gene3D | G3DSA:3.30.30.30 | - | 49 | 101 | 0 |
| 2 | g10883.t5 | PANTHER | PTHR19375 | HEAT SHOCK PROTEIN 70KDA | 1 | 173 | 0 |
| 3 | g10883.t5 | PANTHER | PTHR19375:SF451 | HEAT SHOCK 70 KDA PROTEIN, MITOCHONDRIAL | 1 | 173 | 0 |
| 4 | g10883.t5 | PRINTS | PR00301 | 70kDa heat shock protein signature | 13 | 25 | 0 |
| 6 | g10883.t5 | PRINTS | PR00301 | 70kDa heat shock protein signature | 36 | 44 | 0 |
| 5 | g10883.t5 | PRINTS | PR00301 | 70kDa heat shock protein signature | 121 | 141 | 0 |
| 1 | g10883.t5 | Pfam | PF00012 | Hsp70 protein | 1 | 170 | 0 |
| 7 | g10883.t5 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 3 | 167 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
