Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Probable cytochrome P450 313a4.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1089 g1089.t1 isoform g1089.t1 8075914 8077988
chr_3 g1089 g1089.t1 exon g1089.t1.exon1 8075914 8076787
chr_3 g1089 g1089.t1 cds g1089.t1.CDS1 8075914 8076787
chr_3 g1089 g1089.t1 exon g1089.t1.exon2 8077369 8077988
chr_3 g1089 g1089.t1 cds g1089.t1.CDS2 8077369 8077988
chr_3 g1089 g1089.t1 TSS g1089.t1 8078032 8078032
chr_3 g1089 g1089.t1 TTS g1089.t1 NA NA

Sequences

>g1089.t1 Gene=g1089 Length=1494
ATGTTTACGAGTGAAATTTTATTTCTTACCATTTTGGTGATAATTTTGGGATACTTTTGG
AATAATCGAAGATTTTGGTATTTAATTTGGAAAATTCCAAAAGTTGCCGCATTCGATATG
ACTTATAAAAATATTTACAATTATTATTTTGGAAATACAAAAATTCTTTTCAAGGTTTTG
GAAAGTCTTTTTGAAAGAACCAAAGGAATTTCAATTGTCAAATATTTTCCTGTTGTGATG
GTTAATGTGGTTTTACCTGAGGATATTAAATTTGTATTTAACTCTAAAGTTTGTATTGAT
AAACCACGTTTAATGATTGATTTATGTGGACTCAGTGAAGGAACACTTTTTGGGAAAGTC
AAGCCATGGCAAGCTCATAGAAAAGTTCTAAATTTTTATTTTACTCAACAATCACTTCGA
TCAATTATTCCGATATTTAATAAAAGAGCTAAAATTTTAATGAATAATTTGAGTAAAAGT
GAAAGCAAAGGAGAATTCAATGTTTTCCATAACATGACAGCATTATCTTTAGAGACAATT
TTATCAGTTATGGAATTGGAAATTGATATTCAAAATTTAGAAGAGAAAGATCGTGATATT
TTCATAAAAAAAATTGAAAATAAGGCTTCAGCAGTGATGTTAAGAATCTTCAAATTTTGG
CTTCACCCTGATTATCTCTACAGTCTCTCAAAAATTTATGAATTTGAAAGAAAGGCAGAA
GTTGGATGTAGTTTCATTTTTGCACCTCAAGTGGTCGAAAATATTCGTGAAAAATTGAAA
AATGATGAGAACAACAACAATGAATATGAAAAACCAAAAACTTTCATTCGTGCCTTTTTA
GATCCAAAAAATAATTTTACAGAACATGAAATATTTGATGAGATAAAAACATTAATTGTT
GCAGCTCAAGATACTTCAGCAGTAGCAACATCATCGACTTTATTACTGCTTGGAATGTTT
AAAGATAAGCAAGAAAAAGTTGTGGAAGAATTGAGACAAATTTTAGGAAATTTTAATGAA
AATGAAAATTTAGATATTGAGCAATTAAATGAGCTGAAATATCTTGAAATGGTCATAAAT
GAATCAATGCGATTAATGCCAGTTGTGCCGCTTGTTGGAAGAAGAAATTTACAAGAAATT
ACACTGAGTGAAGGCTACACAATTCCAATAAATTCAACTTTAATGATTCCAATTTTTAAA
ATTCATCGTAGTAAAGAATTTTGGGGTGATGATGCTGATAAATTTAAACCAGAAAGATTT
GAGCCTGAAGAATTTAAGAAAATTCATCCTTATGTTTTTATACCATTTGCAAAAGGTCCA
AGAATGTGTTTAGGTTGGCGTTATGCAATGTATTTAATGAAAATTCAACTTGCAAGGATT
CTACTAAAATATGAAATTGATACTAGTTTAAAATTAGAAGAACTTGAGTACAAATTTAGT
GTTTCTCTCAATGTCTGTCAAGGCTACAAAATCAGCATCAAAAAGAGAGAATAG

>g1089.t1 Gene=g1089 Length=497
MFTSEILFLTILVIILGYFWNNRRFWYLIWKIPKVAAFDMTYKNIYNYYFGNTKILFKVL
ESLFERTKGISIVKYFPVVMVNVVLPEDIKFVFNSKVCIDKPRLMIDLCGLSEGTLFGKV
KPWQAHRKVLNFYFTQQSLRSIIPIFNKRAKILMNNLSKSESKGEFNVFHNMTALSLETI
LSVMELEIDIQNLEEKDRDIFIKKIENKASAVMLRIFKFWLHPDYLYSLSKIYEFERKAE
VGCSFIFAPQVVENIREKLKNDENNNNEYEKPKTFIRAFLDPKNNFTEHEIFDEIKTLIV
AAQDTSAVATSSTLLLLGMFKDKQEKVVEELRQILGNFNENENLDIEQLNELKYLEMVIN
ESMRLMPVVPLVGRRNLQEITLSEGYTIPINSTLMIPIFKIHRSKEFWGDDADKFKPERF
EPEEFKKIHPYVFIPFAKGPRMCLGWRYAMYLMKIQLARILLKYEIDTSLKLEELEYKFS
VSLNVCQGYKISIKKRE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g1089.t1 Coils Coil Coil 252 272 -
15 g1089.t1 Coils Coil Coil 321 341 -
13 g1089.t1 Gene3D G3DSA:1.10.630.10 Cytochrome p450 35 497 3.8E-87
2 g1089.t1 PANTHER PTHR24291:SF140 CYTOCHROME P450 4C3-RELATED 7 496 3.4E-81
3 g1089.t1 PANTHER PTHR24291 CYTOCHROME P450 FAMILY 4 7 496 3.4E-81
7 g1089.t1 PRINTS PR00463 E-class P450 group I signature 39 58 3.3E-6
8 g1089.t1 PRINTS PR00385 P450 superfamily signature 247 260 7.2E-6
4 g1089.t1 PRINTS PR00463 E-class P450 group I signature 356 374 3.3E-6
10 g1089.t1 PRINTS PR00385 P450 superfamily signature 357 368 7.2E-6
6 g1089.t1 PRINTS PR00463 E-class P450 group I signature 433 443 3.3E-6
9 g1089.t1 PRINTS PR00385 P450 superfamily signature 434 443 7.2E-6
5 g1089.t1 PRINTS PR00463 E-class P450 group I signature 443 466 3.3E-6
11 g1089.t1 PRINTS PR00385 P450 superfamily signature 443 454 7.2E-6
1 g1089.t1 Pfam PF00067 Cytochrome P450 52 469 1.7E-66
17 g1089.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 5 -
18 g1089.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 6 21 -
16 g1089.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 22 497 -
12 g1089.t1 SUPERFAMILY SSF48264 Cytochrome P450 48 496 1.44E-85
19 g1089.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 5 22 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed