Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10897 g10897.t1 TTS g10897.t1 12477992 12477992
chr_1 g10897 g10897.t1 isoform g10897.t1 12478230 12487701
chr_1 g10897 g10897.t1 exon g10897.t1.exon1 12478230 12478837
chr_1 g10897 g10897.t1 cds g10897.t1.CDS1 12478230 12478837
chr_1 g10897 g10897.t1 exon g10897.t1.exon2 12479020 12479134
chr_1 g10897 g10897.t1 cds g10897.t1.CDS2 12479020 12479134
chr_1 g10897 g10897.t1 exon g10897.t1.exon3 12479845 12480135
chr_1 g10897 g10897.t1 cds g10897.t1.CDS3 12479845 12480135
chr_1 g10897 g10897.t1 exon g10897.t1.exon4 12487624 12487701
chr_1 g10897 g10897.t1 cds g10897.t1.CDS4 12487624 12487701
chr_1 g10897 g10897.t1 TSS g10897.t1 NA NA

Sequences

>g10897.t1 Gene=g10897 Length=1092
ATGAAGGAAAGATTAGAGGGAGGAGAACAAGCTGAAACGACACATTTTCTTCCTTTCCCT
TTTGCTTATTTGCTTAAGCTCAATTCTGCAACTTACAAAGCTACAACGTCATATTCAGCC
GGCGGTGTAGGTCGAAATATAGCTGAAGATTTACATAAACTAGACAATCACGTTACGTTC
ATCAGTGCTTTCGGAAGTGATCAAAATGGATCATTTTTGCGTAACACATTGCCAGAAAAT
GCCATCACTGCCAGTCTAATATCTGACACAATGGCAACCGCAACTTGTGCAATAATTCTC
GATAAAAGCGGCGATTGCAAACTACATATAGGTGATATGAGAATTCATCAGGAAATCACA
CCTGAATTGATATATGAAAATGCACATTTGATTGAAAAAACACCCCTCGTATGCATCGAT
GCGAACCTTTCATGTGAAACTATCGATGCGATTCTGTTGTTGGCGTGCAAATACAATAAA
CCAGTGTTTTACGAGCCTACGGACGTATTCATTGCGGATAAACCTTTTCAATTGAACCCC
AAGCAATATCATCAAATCAAATTCATGACGCCTAATATGAATGAATTGCGAAAAATAGCT
CAAACATTAAAACCATCATTATCATCATCATCATTGCCATTGTCTTCTTCCACACATGAG
AGTGCCTTGAAAATTGATGAAATAGCAAATTTATGTGGTGAACTTCGTGATGTAGTAGAG
AATATTGTCGTCACTGTCGGCTGCGATGGAATTTTCATGCAAAGGTTTCGTGATGCCGAG
AGTGGCTTCTTTAATAGTAATTTGAAGTACATCGATGATGACCATGGTAAAGGAAAATTG
CAGCTACGACATTATCCTTCTATGACAATTGAAAAGGATGTTAAGAGCTCTTCGGGAGCA
GGGGATGCTTTTTGCGCTGGTTTCATAACCGCAATGTTGTGTGGTAAATCGGAAGCCATT
TGCGTTTCAGTTGGTTTTGAAGCAGCGTTGACAGCTCTACGTTCAGTGCATGCAGTTCCA
AAGGAATTTTTTAATAAAAGTCATGCATGCTGGAAAACTTCAGCAAAGTTTAACATCGTT
AGAAGCGAATGA

>g10897.t1 Gene=g10897 Length=363
MKERLEGGEQAETTHFLPFPFAYLLKLNSATYKATTSYSAGGVGRNIAEDLHKLDNHVTF
ISAFGSDQNGSFLRNTLPENAITASLISDTMATATCAIILDKSGDCKLHIGDMRIHQEIT
PELIYENAHLIEKTPLVCIDANLSCETIDAILLLACKYNKPVFYEPTDVFIADKPFQLNP
KQYHQIKFMTPNMNELRKIAQTLKPSLSSSSLPLSSSTHESALKIDEIANLCGELRDVVE
NIVVTVGCDGIFMQRFRDAESGFFNSNLKYIDDDHGKGKLQLRHYPSMTIEKDVKSSSGA
GDAFCAGFITAMLCGKSEAICVSVGFEAALTALRSVHAVPKEFFNKSHACWKTSAKFNIV
RSE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g10897.t1 CDD cd01941 YeiC_kinase_like 26 335 1.32906E-56
6 g10897.t1 Gene3D G3DSA:3.40.1190.20 - 21 355 4.4E-47
2 g10897.t1 PANTHER PTHR43085 HEXOKINASE FAMILY MEMBER 30 345 4.1E-22
3 g10897.t1 PANTHER PTHR43085:SF26 PFKB-LIKE CARBOHYDRATE KINASE FAMILY PROTEIN 30 345 4.1E-22
1 g10897.t1 Pfam PF00294 pfkB family carbohydrate kinase 32 335 2.5E-24
5 g10897.t1 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 296 309 -
4 g10897.t1 SUPERFAMILY SSF53613 Ribokinase-like 32 340 5.3E-33

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016773 phosphotransferase activity, alcohol group as acceptor MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values