General information for g10897.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g10897 is located on chr_1: 12478230..12487701 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10897 | g10897.t2 | TTS | g10897.t2 | 12477992 | 12477992 |
| chr_1 | g10897 | g10897.t2 | isoform | g10897.t2 | 12478230 | 12478837 |
| chr_1 | g10897 | g10897.t2 | exon | g10897.t2.exon1 | 12478230 | 12478837 |
| chr_1 | g10897 | g10897.t2 | cds | g10897.t2.CDS1 | 12478230 | 12478757 |
| chr_1 | g10897 | g10897.t2 | TSS | g10897.t2 | NA | NA |
Sequences
>g10897.t2 Gene=g10897 Length=608
TGTTTTACGAGCCTACGGACGTATTCATTGCGGATAAACCTTTTCAATTGAACCCCAAGC
AATATCATCAAATCAAATTCATGACGCCTAATATGAATGAATTGCGAAAAATAGCTCAAA
CATTAAAACCATCATTATCATCATCATCATTGCCATTGTCTTCTTCCACACATGAGAGTG
CCTTGAAAATTGATGAAATAGCAAATTTATGTGGTGAACTTCGTGATGTAGTAGAGAATA
TTGTCGTCACTGTCGGCTGCGATGGAATTTTCATGCAAAGGTTTCGTGATGCCGAGAGTG
GCTTCTTTAATAGTAATTTGAAGTACATCGATGATGACCATGGTAAAGGAAAATTGCAGC
TACGACATTATCCTTCTATGACAATTGAAAAGGATGTTAAGAGCTCTTCGGGAGCAGGGG
ATGCTTTTTGCGCTGGTTTCATAACCGCAATGTTGTGTGGTAAATCGGAAGCCATTTGCG
TTTCAGTTGGTTTTGAAGCAGCGTTGACAGCTCTACGTTCAGTGCATGCAGTTCCAAAGG
AATTTTTTAATAAAAGTCATGCATGCTGGAAAACTTCAGCAAAGTTTAACATCGTTAGAA
GCGAATGA
>g10897.t2 Gene=g10897 Length=175
MTPNMNELRKIAQTLKPSLSSSSLPLSSSTHESALKIDEIANLCGELRDVVENIVVTVGC
DGIFMQRFRDAESGFFNSNLKYIDDDHGKGKLQLRHYPSMTIEKDVKSSSGAGDAFCAGF
ITAMLCGKSEAICVSVGFEAALTALRSVHAVPKEFFNKSHACWKTSAKFNIVRSE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g10897.t2 | Gene3D | G3DSA:3.40.1190.20 | - | 1 | 168 | 4.5E-14 |
| 1 | g10897.t2 | Pfam | PF00294 | pfkB family carbohydrate kinase | 95 | 147 | 2.3E-6 |
| 3 | g10897.t2 | ProSitePatterns | PS00584 | pfkB family of carbohydrate kinases signature 2. | 108 | 121 | - |
| 2 | g10897.t2 | SUPERFAMILY | SSF53613 | Ribokinase-like | 2 | 152 | 4.46E-12 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016773 | phosphotransferase activity, alcohol group as acceptor | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
