General information for g10914.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Very low-density lipoprotein receptor.
Parent gene
- The parent gene g10914 is located on chr_1: 12637205..12643690 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10914 | g10914.t1 | isoform | g10914.t1 | 12607114 | 12643690 |
| chr_1 | g10914 | g10914.t1 | exon | g10914.t1.exon1 | 12607114 | 12607423 |
| chr_1 | g10914 | g10914.t1 | cds | g10914.t1.CDS1 | 12607114 | 12607423 |
| chr_1 | g10914 | g10914.t1 | exon | g10914.t1.exon2 | 12620248 | 12620382 |
| chr_1 | g10914 | g10914.t1 | cds | g10914.t1.CDS2 | 12620248 | 12620382 |
| chr_1 | g10914 | g10914.t1 | exon | g10914.t1.exon3 | 12630141 | 12630260 |
| chr_1 | g10914 | g10914.t1 | cds | g10914.t1.CDS3 | 12630141 | 12630260 |
| chr_1 | g10914 | g10914.t1 | exon | g10914.t1.exon4 | 12632257 | 12632379 |
| chr_1 | g10914 | g10914.t1 | cds | g10914.t1.CDS4 | 12632257 | 12632379 |
| chr_1 | g10914 | g10914.t1 | exon | g10914.t1.exon5 | 12636086 | 12636312 |
| chr_1 | g10914 | g10914.t1 | cds | g10914.t1.CDS5 | 12636086 | 12636312 |
| chr_1 | g10914 | g10914.t1 | exon | g10914.t1.exon6 | 12636840 | 12637104 |
| chr_1 | g10914 | g10914.t1 | cds | g10914.t1.CDS6 | 12636840 | 12637104 |
| chr_1 | g10914 | g10914.t1 | exon | g10914.t1.exon7 | 12637205 | 12637527 |
| chr_1 | g10914 | g10914.t1 | cds | g10914.t1.CDS7 | 12637205 | 12637527 |
| chr_1 | g10914 | g10914.t1 | exon | g10914.t1.exon8 | 12637597 | 12637829 |
| chr_1 | g10914 | g10914.t1 | cds | g10914.t1.CDS8 | 12637597 | 12637829 |
| chr_1 | g10914 | g10914.t1 | exon | g10914.t1.exon9 | 12637991 | 12638354 |
| chr_1 | g10914 | g10914.t1 | cds | g10914.t1.CDS9 | 12637991 | 12638354 |
| chr_1 | g10914 | g10914.t1 | exon | g10914.t1.exon10 | 12638422 | 12638631 |
| chr_1 | g10914 | g10914.t1 | cds | g10914.t1.CDS10 | 12638422 | 12638631 |
| chr_1 | g10914 | g10914.t1 | exon | g10914.t1.exon11 | 12638822 | 12639020 |
| chr_1 | g10914 | g10914.t1 | cds | g10914.t1.CDS11 | 12638822 | 12639020 |
| chr_1 | g10914 | g10914.t1 | exon | g10914.t1.exon12 | 12639640 | 12639783 |
| chr_1 | g10914 | g10914.t1 | cds | g10914.t1.CDS12 | 12639640 | 12639783 |
| chr_1 | g10914 | g10914.t1 | exon | g10914.t1.exon13 | 12643151 | 12643266 |
| chr_1 | g10914 | g10914.t1 | cds | g10914.t1.CDS13 | 12643151 | 12643266 |
| chr_1 | g10914 | g10914.t1 | exon | g10914.t1.exon14 | 12643508 | 12643690 |
| chr_1 | g10914 | g10914.t1 | cds | g10914.t1.CDS14 | 12643508 | 12643690 |
| chr_1 | g10914 | g10914.t1 | TTS | g10914.t1 | 12644154 | 12644154 |
| chr_1 | g10914 | g10914.t1 | TSS | g10914.t1 | NA | NA |
Sequences
>g10914.t1 Gene=g10914 Length=2952
ATGGTGATCACTGTGTTAAGCGCTAAAAAAGCGAAAATTTTTTGTTTGTTCTGGTTTTTA
TTTATCGTCTCATTTGCAAATGGCCAAAACGATAGCATCAATAATAGCAATGTTCAGCAG
CATCATCAACAACTTTATAAATATAATTCAATCAATAATAGAAGTGTGACAAATGGAGAA
AGTTTAAAAACACCTCCTGCAATTAGTAAAGATAAGCTAGCATCAAAATCAAATATAAAT
AGCAAATATGAAACACAATCTACAGTGACTTCGGCTATTGCTATTGGTCTTTTTCCTGGT
TCTAAAAAAATGCGTCAAAGAAAATGTACAGAACGACAGTTTCAATGTAACAATGGTGAA
TGCATCCCTATGAAATACCTTTGTGATGGTGAACCAGATTGCCAAGATAAAAGTGATGAA
GATCAAACAGAATGTTCTCATAAACAAAACGAATGTAGTCAAGATCAATTTAGATGTAAT
AATGGACGATGTATACCAAAAAGATGGACCTGTGATCAGGAGAAAGATTGTAGCGATGGA
TCTGATGAAGATGCAAGCCATTGTCAAATAAAAATGTGTTCGTCCGAGGACTTTACGTGC
AGGAGCAACAATGGTGAATGCATTCCACTTTCGTGGATGTGTGATGGCAACAAAGATTGT
ACAGATGGATCTGATGAAGCATCATGTAACGATACTTGTCGTTCCGATGAGTTTACATGT
AATAATGGTAGATGTATTCAAAGTCGGTGGGTTTGTGATCGTGACGATGATTGTGGTGAT
GGATCTGATGAAGCCAAGTGTACTCCTACGAAATGTGATCCAATTAAACAATTTCAATGC
TCAGAGAAGTATTGTATTACATCGAAATGGCGTTGTGACGGCGAACAAGATTGTCCTGAT
GGTTCCGATGAAAAAGATTGTTCGATTATAATTCGACGTGAATCCTCATGTGTACAAGCA
GAGTATCAATGTAAAGATGGTATAACATGCATTCATCGTTCATGGGTTTGTGATGGTGAG
AAAGATTGCCCAGGAGGCGATGACGAGCAACCACCGCTCTGCCAAAATGTCACATGTCGA
GCAGATCAATTTCAATGTGCAGATAAGACATGCATTCATGGTCGTTTCCACTGTTCAGGC
AAAGCTGAATGTAAGGATGGAAGTGATGAACTAAATTGCCCTGTTCCAAAGAAATCATGT
GATCGCAAAACGGAATTTGATTGTGGTGATGGAATGTGCATACCTCTTTCAAAAGTATGT
GATAAGCACCAAGATTGTCCGGATGCAGAGGACGAACCAGTAGGAAAATGTGGACGTGAT
GAATGCAAATCAAATAATGGAGGCTGTTCACAATTATGCGTTGATACGCAAGCCGGCTAC
TATTGTGAATGTCGTCAAGGCTATAAATTATCTAGTGACAATCGTACGTGTGAGGACATT
AATGAATGTGAAATTCCTGGTTCATGTTCTCAATTATGTACAAATGAACGTGGCGGTTTT
AAATGCGAATGTGTTTCTGGCTTTTTGAGAGATCCTCGAGACCACACTAAATGCAAAGCC
ACAGAAGGACATGCATCGTTGCTTTTTGCACGTCGTCATGACATCAGAAAGATTTCACTT
GACCATCGTGAGATGACTTCAATTGTTAATGAAACAAAGTCGGCTACAGCATTAGACTAT
GTATTCAGAACTGGCATGATATTTTGGAGTGACGTAACGGAACAAAGAATTTATAAAGCA
CCAATTGATGAAGGTACAGAGCAAATTGTTGTACTGCAGGATAAGACAGTGACATCAGAT
GGACTTGCGGTTGATTGGATTTACAATCACATCTACTTTACTGATACAAAGCGTTATACA
ATTGAGATAATGAATTTTGACGGAAACATGGGAAAGGTGCTGATTAAAGATAATTTAGAG
ATACCACGTGCCATTGCAGTTAATCCTCTCGATGGATGGATGTTCTGGAGTGATTGGGGT
TCAAGTCCAAGAATAGAACGTGCTGGTATGGACGGTACACATCGTCAAACAATCGTCAGC
TATGACGTAAAATGGCCTAACGGATTAACACTTGATCTCGTGCAAAAACGCGTCTATTGG
GTTGATGCTAAATTAAATGTAATTTCATCATGTAATTTCGATGGCTCTGGTCGTAATTTA
GTGCTTCATTCAACCGATTCACTTCGACATCCATTTTCAATTACAACATTCGAGGATTAT
GTATATTGGACGGACTGGGATAAAGAGGCGGTTTTCCGTGCAAATAAATTCAATGGCAAT
GATGTTGAACCTGTCACTGCATTACATATGCTTCAACATCCGATGACAATTCATGTATAT
CATCCATACCGACAGCCAGATGGTGAAAATCATTGTCAAGCAGTGAATGGACATTGTTCA
CATTTGTGCTTGCCAGCTCCAAGAATCAACGCTCAAAGTGCACGAATCTCGTGTGCCTGT
CCAACAGGATTAAAACTTATGGATGATGGTCTGATGTGTGTTGAAGACGAAACTCATACA
ACAACAGGAAAAACAGAAACAGCAACGAATCATCATTCGCATCATTTGGAAACAACAACA
AAAATATCGAAAGGAATTGAACATCATTCGTCCAATATTTATGATAGTGATGTTGATGTT
ATTAAAAGCCACATTGGATTATATAATAATGAAACACAAGCAAGTGTACTAGCTGACGGT
CCTGACAATGGAATGGTTGCAATCATAACGATTGTTGTAGCCACATTGCTGGTTCTTGTG
CTAACAGTCCTGGCTGTACTCGTCTACCGACATTATGTTCACAAAAATCTAACGTCCATA
AACTTTGATAATCCTGTGTATCGTAAAACAACGGAGGATCAAGTGCGTTTGAAGAAATCG
CTTTCGCCTATAATTTATCCAAGCACGGTTGGAGAGGAGTTACGCGCTTTAGCACAAGAT
TGTCCGATTTAA
>g10914.t1 Gene=g10914 Length=983
MVITVLSAKKAKIFCLFWFLFIVSFANGQNDSINNSNVQQHHQQLYKYNSINNRSVTNGE
SLKTPPAISKDKLASKSNINSKYETQSTVTSAIAIGLFPGSKKMRQRKCTERQFQCNNGE
CIPMKYLCDGEPDCQDKSDEDQTECSHKQNECSQDQFRCNNGRCIPKRWTCDQEKDCSDG
SDEDASHCQIKMCSSEDFTCRSNNGECIPLSWMCDGNKDCTDGSDEASCNDTCRSDEFTC
NNGRCIQSRWVCDRDDDCGDGSDEAKCTPTKCDPIKQFQCSEKYCITSKWRCDGEQDCPD
GSDEKDCSIIIRRESSCVQAEYQCKDGITCIHRSWVCDGEKDCPGGDDEQPPLCQNVTCR
ADQFQCADKTCIHGRFHCSGKAECKDGSDELNCPVPKKSCDRKTEFDCGDGMCIPLSKVC
DKHQDCPDAEDEPVGKCGRDECKSNNGGCSQLCVDTQAGYYCECRQGYKLSSDNRTCEDI
NECEIPGSCSQLCTNERGGFKCECVSGFLRDPRDHTKCKATEGHASLLFARRHDIRKISL
DHREMTSIVNETKSATALDYVFRTGMIFWSDVTEQRIYKAPIDEGTEQIVVLQDKTVTSD
GLAVDWIYNHIYFTDTKRYTIEIMNFDGNMGKVLIKDNLEIPRAIAVNPLDGWMFWSDWG
SSPRIERAGMDGTHRQTIVSYDVKWPNGLTLDLVQKRVYWVDAKLNVISSCNFDGSGRNL
VLHSTDSLRHPFSITTFEDYVYWTDWDKEAVFRANKFNGNDVEPVTALHMLQHPMTIHVY
HPYRQPDGENHCQAVNGHCSHLCLPAPRINAQSARISCACPTGLKLMDDGLMCVEDETHT
TTGKTETATNHHSHHLETTTKISKGIEHHSSNIYDSDVDVIKSHIGLYNNETQASVLADG
PDNGMVAIITIVVATLLVLVLTVLAVLVYRHYVHKNLTSINFDNPVYRKTTEDQVRLKKS
LSPIIYPSTVGEELRALAQDCPI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 59 | g10914.t1 | CDD | cd00112 | LDLa | 109 | 141 | 2.71629E-10 |
| 56 | g10914.t1 | CDD | cd00112 | LDLa | 152 | 184 | 2.70381E-11 |
| 58 | g10914.t1 | CDD | cd00112 | LDLa | 193 | 229 | 5.88214E-10 |
| 55 | g10914.t1 | CDD | cd00112 | LDLa | 277 | 307 | 1.79429E-9 |
| 57 | g10914.t1 | CDD | cd00112 | LDLa | 317 | 350 | 3.99763E-7 |
| 53 | g10914.t1 | CDD | cd00112 | LDLa | 359 | 393 | 1.63916E-8 |
| 54 | g10914.t1 | CDD | cd00112 | LDLa | 404 | 432 | 9.56809E-7 |
| 60 | g10914.t1 | CDD | cd00054 | EGF_CA | 479 | 508 | 3.91916E-4 |
| 39 | g10914.t1 | Gene3D | G3DSA:4.10.400.10 | - | 103 | 147 | 3.2E-15 |
| 45 | g10914.t1 | Gene3D | G3DSA:4.10.400.10 | - | 148 | 191 | 3.4E-15 |
| 41 | g10914.t1 | Gene3D | G3DSA:4.10.400.10 | - | 192 | 229 | 2.0E-13 |
| 42 | g10914.t1 | Gene3D | G3DSA:4.10.400.10 | - | 230 | 271 | 4.6E-15 |
| 40 | g10914.t1 | Gene3D | G3DSA:4.10.400.10 | - | 272 | 309 | 2.3E-12 |
| 38 | g10914.t1 | Gene3D | G3DSA:4.10.400.10 | - | 312 | 357 | 5.1E-12 |
| 43 | g10914.t1 | Gene3D | G3DSA:4.10.400.10 | - | 358 | 396 | 1.0E-11 |
| 44 | g10914.t1 | Gene3D | G3DSA:4.10.400.10 | - | 397 | 432 | 3.8E-10 |
| 34 | g10914.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 442 | 483 | 4.2E-16 |
| 36 | g10914.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 484 | 521 | 7.0E-10 |
| 37 | g10914.t1 | Gene3D | G3DSA:2.120.10.30 | TolB | 525 | 783 | 8.3E-98 |
| 35 | g10914.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 785 | 835 | 1.1E-18 |
| 14 | g10914.t1 | PANTHER | PTHR24270 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED | 104 | 956 | 1.2E-232 |
| 15 | g10914.t1 | PANTHER | PTHR24270:SF16 | VERY LOW-DENSITY LIPOPROTEIN RECEPTOR | 104 | 956 | 1.2E-232 |
| 19 | g10914.t1 | PRINTS | PR00261 | Low density lipoprotein (LDL) receptor signature | 119 | 140 | 5.1E-52 |
| 17 | g10914.t1 | PRINTS | PR00261 | Low density lipoprotein (LDL) receptor signature | 162 | 183 | 5.1E-52 |
| 21 | g10914.t1 | PRINTS | PR00261 | Low density lipoprotein (LDL) receptor signature | 205 | 226 | 5.1E-52 |
| 16 | g10914.t1 | PRINTS | PR00261 | Low density lipoprotein (LDL) receptor signature | 243 | 264 | 5.1E-52 |
| 20 | g10914.t1 | PRINTS | PR00261 | Low density lipoprotein (LDL) receptor signature | 283 | 304 | 5.1E-52 |
| 18 | g10914.t1 | PRINTS | PR00261 | Low density lipoprotein (LDL) receptor signature | 328 | 349 | 5.1E-52 |
| 2 | g10914.t1 | Pfam | PF00057 | Low-density lipoprotein receptor domain class A | 108 | 145 | 1.9E-12 |
| 4 | g10914.t1 | Pfam | PF00057 | Low-density lipoprotein receptor domain class A | 151 | 188 | 1.3E-11 |
| 5 | g10914.t1 | Pfam | PF00057 | Low-density lipoprotein receptor domain class A | 192 | 229 | 3.2E-11 |
| 6 | g10914.t1 | Pfam | PF00057 | Low-density lipoprotein receptor domain class A | 232 | 267 | 1.2E-12 |
| 1 | g10914.t1 | Pfam | PF00057 | Low-density lipoprotein receptor domain class A | 271 | 307 | 2.0E-11 |
| 7 | g10914.t1 | Pfam | PF00057 | Low-density lipoprotein receptor domain class A | 316 | 350 | 1.3E-9 |
| 3 | g10914.t1 | Pfam | PF00057 | Low-density lipoprotein receptor domain class A | 358 | 393 | 2.2E-11 |
| 8 | g10914.t1 | Pfam | PF00057 | Low-density lipoprotein receptor domain class A | 399 | 437 | 2.2E-7 |
| 10 | g10914.t1 | Pfam | PF14670 | Coagulation Factor Xa inhibitory site | 442 | 477 | 6.6E-13 |
| 9 | g10914.t1 | Pfam | PF07645 | Calcium-binding EGF domain | 479 | 518 | 2.2E-6 |
| 13 | g10914.t1 | Pfam | PF00058 | Low-density lipoprotein receptor repeat class B | 654 | 692 | 1.5E-11 |
| 12 | g10914.t1 | Pfam | PF00058 | Low-density lipoprotein receptor repeat class B | 697 | 735 | 2.6E-4 |
| 11 | g10914.t1 | Pfam | PF14670 | Coagulation Factor Xa inhibitory site | 792 | 833 | 2.9E-9 |
| 48 | g10914.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 28 | - |
| 49 | g10914.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 12 | - |
| 50 | g10914.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 13 | 23 | - |
| 52 | g10914.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 24 | 28 | - |
| 47 | g10914.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 29 | 904 | - |
| 51 | g10914.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 905 | 929 | - |
| 46 | g10914.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 930 | 983 | - |
| 89 | g10914.t1 | ProSitePatterns | PS01209 | LDL-receptor class A (LDLRA) domain signature. | 164 | 188 | - |
| 87 | g10914.t1 | ProSitePatterns | PS01209 | LDL-receptor class A (LDLRA) domain signature. | 207 | 229 | - |
| 85 | g10914.t1 | ProSitePatterns | PS01209 | LDL-receptor class A (LDLRA) domain signature. | 245 | 267 | - |
| 86 | g10914.t1 | ProSitePatterns | PS01209 | LDL-receptor class A (LDLRA) domain signature. | 285 | 307 | - |
| 88 | g10914.t1 | ProSitePatterns | PS01209 | LDL-receptor class A (LDLRA) domain signature. | 413 | 437 | - |
| 91 | g10914.t1 | ProSitePatterns | PS00010 | Aspartic acid and asparagine hydroxylation site. | 453 | 464 | - |
| 84 | g10914.t1 | ProSitePatterns | PS01186 | EGF-like domain signature 2. | 462 | 477 | - |
| 90 | g10914.t1 | ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 479 | 502 | - |
| 98 | g10914.t1 | ProSiteProfiles | PS50068 | LDL-receptor class A (LDLRA) domain profile. | 108 | 146 | 14.05 |
| 101 | g10914.t1 | ProSiteProfiles | PS50068 | LDL-receptor class A (LDLRA) domain profile. | 151 | 189 | 14.35 |
| 97 | g10914.t1 | ProSiteProfiles | PS50068 | LDL-receptor class A (LDLRA) domain profile. | 192 | 230 | 14.55 |
| 99 | g10914.t1 | ProSiteProfiles | PS50068 | LDL-receptor class A (LDLRA) domain profile. | 232 | 268 | 14.6 |
| 103 | g10914.t1 | ProSiteProfiles | PS50068 | LDL-receptor class A (LDLRA) domain profile. | 271 | 308 | 13.887 |
| 100 | g10914.t1 | ProSiteProfiles | PS50068 | LDL-receptor class A (LDLRA) domain profile. | 316 | 355 | 11.7 |
| 104 | g10914.t1 | ProSiteProfiles | PS50068 | LDL-receptor class A (LDLRA) domain profile. | 358 | 394 | 12.463 |
| 102 | g10914.t1 | ProSiteProfiles | PS50068 | LDL-receptor class A (LDLRA) domain profile. | 399 | 438 | 12.262 |
| 93 | g10914.t1 | ProSiteProfiles | PS51120 | LDL-receptor class B (LDLRB) repeat profile. | 565 | 608 | 11.85 |
| 96 | g10914.t1 | ProSiteProfiles | PS51120 | LDL-receptor class B (LDLRB) repeat profile. | 609 | 651 | 12.871 |
| 92 | g10914.t1 | ProSiteProfiles | PS51120 | LDL-receptor class B (LDLRB) repeat profile. | 652 | 695 | 15.354 |
| 94 | g10914.t1 | ProSiteProfiles | PS51120 | LDL-receptor class B (LDLRB) repeat profile. | 696 | 740 | 12.43 |
| 95 | g10914.t1 | ProSiteProfiles | PS51120 | LDL-receptor class B (LDLRB) repeat profile. | 741 | 783 | 6.536 |
| 69 | g10914.t1 | SMART | SM00192 | LDLa_2 | 108 | 147 | 1.2E-14 |
| 67 | g10914.t1 | SMART | SM00192 | LDLa_2 | 151 | 190 | 1.8E-14 |
| 83 | g10914.t1 | SMART | SM00181 | egf_5 | 151 | 189 | 35.0 |
| 64 | g10914.t1 | SMART | SM00192 | LDLa_2 | 192 | 231 | 4.6E-13 |
| 80 | g10914.t1 | SMART | SM00181 | egf_5 | 192 | 230 | 150.0 |
| 63 | g10914.t1 | SMART | SM00192 | LDLa_2 | 232 | 269 | 4.7E-16 |
| 81 | g10914.t1 | SMART | SM00181 | egf_5 | 232 | 268 | 240.0 |
| 70 | g10914.t1 | SMART | SM00192 | LDLa_2 | 271 | 309 | 1.7E-11 |
| 68 | g10914.t1 | SMART | SM00192 | LDLa_2 | 316 | 356 | 8.6E-11 |
| 66 | g10914.t1 | SMART | SM00192 | LDLa_2 | 358 | 395 | 6.4E-12 |
| 65 | g10914.t1 | SMART | SM00192 | LDLa_2 | 399 | 439 | 8.8E-10 |
| 72 | g10914.t1 | SMART | SM00179 | egfca_6 | 438 | 478 | 4.0E-4 |
| 79 | g10914.t1 | SMART | SM00181 | egf_5 | 441 | 478 | 3.5E-5 |
| 71 | g10914.t1 | SMART | SM00179 | egfca_6 | 479 | 519 | 2.0E-7 |
| 78 | g10914.t1 | SMART | SM00181 | egf_5 | 482 | 519 | 0.29 |
| 74 | g10914.t1 | SMART | SM00135 | LY_2 | 545 | 587 | 4.1 |
| 73 | g10914.t1 | SMART | SM00135 | LY_2 | 589 | 631 | 3.5E-8 |
| 77 | g10914.t1 | SMART | SM00135 | LY_2 | 632 | 675 | 1.1E-14 |
| 75 | g10914.t1 | SMART | SM00135 | LY_2 | 676 | 718 | 8.5E-15 |
| 76 | g10914.t1 | SMART | SM00135 | LY_2 | 720 | 762 | 6.9E-6 |
| 82 | g10914.t1 | SMART | SM00181 | egf_5 | 791 | 834 | 7.2 |
| 27 | g10914.t1 | SUPERFAMILY | SSF57424 | LDL receptor-like module | 106 | 143 | 1.1E-10 |
| 23 | g10914.t1 | SUPERFAMILY | SSF57424 | LDL receptor-like module | 150 | 188 | 7.2E-11 |
| 30 | g10914.t1 | SUPERFAMILY | SSF57424 | LDL receptor-like module | 185 | 229 | 2.62E-10 |
| 24 | g10914.t1 | SUPERFAMILY | SSF57424 | LDL receptor-like module | 232 | 267 | 5.76E-11 |
| 28 | g10914.t1 | SUPERFAMILY | SSF57424 | LDL receptor-like module | 271 | 308 | 2.23E-10 |
| 29 | g10914.t1 | SUPERFAMILY | SSF57424 | LDL receptor-like module | 315 | 353 | 2.23E-8 |
| 25 | g10914.t1 | SUPERFAMILY | SSF57424 | LDL receptor-like module | 353 | 394 | 4.97E-10 |
| 26 | g10914.t1 | SUPERFAMILY | SSF57424 | LDL receptor-like module | 400 | 433 | 8.12E-8 |
| 31 | g10914.t1 | SUPERFAMILY | SSF57184 | Growth factor receptor domain | 439 | 835 | 1.15E-19 |
| 22 | g10914.t1 | SUPERFAMILY | SSF63825 | YWTD domain | 527 | 787 | 1.57E-51 |
| 33 | g10914.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 28 | - |
| 61 | g10914.t1 | SignalP_GRAM_NEGATIVE | SignalP-noTM | SignalP-noTM | 1 | 28 | - |
| 32 | g10914.t1 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 25 | - |
| 62 | g10914.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 906 | 928 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0030229 | very-low-density lipoprotein particle receptor activity | MF |
| GO:0005515 | protein binding | MF |
| GO:0005509 | calcium ion binding | MF |
KEGG
Orthology
- This transcript has been annotated with K20053 (very low-density lipoprotein receptor)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
