Gene loci information

Transcript annotation

  • This transcript has been annotated as Nucleoside diphosphate kinase 7.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10920 g10920.t1 TTS g10920.t1 12705679 12705679
chr_1 g10920 g10920.t1 isoform g10920.t1 12705733 12706984
chr_1 g10920 g10920.t1 exon g10920.t1.exon1 12705733 12706591
chr_1 g10920 g10920.t1 cds g10920.t1.CDS1 12705733 12706591
chr_1 g10920 g10920.t1 exon g10920.t1.exon2 12706650 12706918
chr_1 g10920 g10920.t1 cds g10920.t1.CDS2 12706650 12706918
chr_1 g10920 g10920.t1 exon g10920.t1.exon3 12706976 12706984
chr_1 g10920 g10920.t1 cds g10920.t1.CDS3 12706976 12706984
chr_1 g10920 g10920.t1 TSS g10920.t1 12707347 12707347

Sequences

>g10920.t1 Gene=g10920 Length=1137
ATGATGATGAATGGATACAATGATTTTTATACATTTTCTTGCGATTGGGAAACTGCAGAG
ACGACACGAAAATTAAATCTTTATTTTTATCCTCGAGATAATTCTATTGAATTATACGAT
GTATGCATGAAACGCATTCTTCTCAAACGCACAGTGACTGAATTATCATTAAATGATATT
TATTTAAATGCAACATTAACAATCTTCGGTAAGAAAATAATTGTGAGACAATATGGAAAT
CCTATGACAGAACAAAAATTGAGCAAAATTAAACAAAGGACATTTTTAATGATAAAGCCT
GAAGCTCGACAATTTATTGGTGAAATAATTTCAACACTTGAGAAACGCAAATTATACATC
AGAAATCTAAAAATGCTAAAGCTACAATCATTGGCAGCAGTTCAATTTCTCAATCAGAGG
AAGACACCAGAAAATAAAGTTTCAGCTCTAATGCAGAATTTAACGTCTGGATTAATAACT
GTATTGGAGATAACAGGTGAAAATGCATATGAACAATTAAAGCATATATGCGGTCCAGAA
AACTTTGATGAAGCAAAAAATAACTATCCGATTTCATTGCGAGCTCTTTATGGATTTGAT
GATATTCAATGTGGCGTATTGCTCTCTGATGACTATAATATGAATCTACAAGATCTCGAA
TATTTTTTTCCATCTATGAATGATAAATTAAAAGTTCAAGCTAAATTTATAAAATCTACT
TTGTGCATAATCAAGCCACATGCTATAAAAGAAGGAAATATTGGAGCAATTTTAAAAATG
ATTATTGAAAATGGATTTTCTATAACAGCCATGAAAATGCTTAATTTGTCTCGTTCAAAA
TGTGAAACATTTTATGAATTATATAAAGGTGTTGTAGATGATTATGCATCAATGGTCCTG
CAATTGCAAAGTGGTGCATGTTTAGCTATTGAAGTTCAAGGGAATAATGATGACGGTGTG
CAAAAAGCATTTCGATCTTTGTGTGGACCTAGTGATCCATCAATCGCAAAAATTATACGT
CCAAATACAATACGAGCTAATTTTGGAACTGATAAAATTCTCAATGCTGTACACTGCACT
GACCTTAGTGAAGATACTCTTTTGGAAATGGAATATATTTTTAAAGAATTAGATTAA

>g10920.t1 Gene=g10920 Length=378
MMMNGYNDFYTFSCDWETAETTRKLNLYFYPRDNSIELYDVCMKRILLKRTVTELSLNDI
YLNATLTIFGKKIIVRQYGNPMTEQKLSKIKQRTFLMIKPEARQFIGEIISTLEKRKLYI
RNLKMLKLQSLAAVQFLNQRKTPENKVSALMQNLTSGLITVLEITGENAYEQLKHICGPE
NFDEAKNNYPISLRALYGFDDIQCGVLLSDDYNMNLQDLEYFFPSMNDKLKVQAKFIKST
LCIIKPHAIKEGNIGAILKMIIENGFSITAMKMLNLSRSKCETFYELYKGVVDDYASMVL
QLQSGACLAIEVQGNNDDGVQKAFRSLCGPSDPSIAKIIRPNTIRANFGTDKILNAVHCT
DLSEDTLLEMEYIFKELD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g10920.t1 CDD cd04412 NDPk7B 239 374 0.0000000
9 g10920.t1 Gene3D G3DSA:3.30.70.141 - 90 227 0.0000000
10 g10920.t1 Gene3D G3DSA:3.30.70.141 - 236 378 0.0000000
3 g10920.t1 PANTHER PTHR43109 NUCLEOSIDE DIPHOSPHATE KINASE 7 18 377 0.0000000
2 g10920.t1 Pfam PF00334 Nucleoside diphosphate kinase 92 225 0.0000000
1 g10920.t1 Pfam PF00334 Nucleoside diphosphate kinase 239 376 0.0000000
11 g10920.t1 ProSiteProfiles PS51336 DM10 domain profile. 6 91 11.3010000
6 g10920.t1 SMART SM00676 dm10 6 91 0.0028000
8 g10920.t1 SMART SM00562 ndk_5 91 228 0.0000002
7 g10920.t1 SMART SM00562 ndk_5 237 378 0.0000000
5 g10920.t1 SUPERFAMILY SSF54919 Nucleoside diphosphate kinase, NDK 91 226 0.0000000
4 g10920.t1 SUPERFAMILY SSF54919 Nucleoside diphosphate kinase, NDK 236 377 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0004550 nucleoside diphosphate kinase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values