Gene loci information

Transcript annotation

  • This transcript has been annotated as Nucleoside diphosphate kinase 7.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10920 g10920.t2 TTS g10920.t2 12705679 12705679
chr_1 g10920 g10920.t2 isoform g10920.t2 12705733 12706984
chr_1 g10920 g10920.t2 exon g10920.t2.exon1 12705733 12706591
chr_1 g10920 g10920.t2 cds g10920.t2.CDS1 12705733 12706591
chr_1 g10920 g10920.t2 exon g10920.t2.exon2 12706665 12706984
chr_1 g10920 g10920.t2 cds g10920.t2.CDS2 12706665 12706801
chr_1 g10920 g10920.t2 TSS g10920.t2 12707347 12707347

Sequences

>g10920.t2 Gene=g10920 Length=1179
ATGATGATGGTAAATAATTTAAAATTTATTTAAACTTATACTCTTAACTAAATATTTGTT
TGACAGAATGGATACAATGATTTTTATACATTTTCTTGCGATTGGGAAACTGCAGAGACG
ACACGAAAATTAAATCTTTATTTTTATCCTCGAGATAATTCTATTGAATTATACGATGTA
TGCATGAAACGCATTCTTCTCAAACGCACAGTGACTGAATTATCATTAAATGATATTTAT
TTAAATGCAACATTAACAATCTTCGGTAAGAAAATAATTGTGAGACAATATGGAAATCCT
ATGACAGAACAAAAATTGAGGACATTTTTAATGATAAAGCCTGAAGCTCGACAATTTATT
GGTGAAATAATTTCAACACTTGAGAAACGCAAATTATACATCAGAAATCTAAAAATGCTA
AAGCTACAATCATTGGCAGCAGTTCAATTTCTCAATCAGAGGAAGACACCAGAAAATAAA
GTTTCAGCTCTAATGCAGAATTTAACGTCTGGATTAATAACTGTATTGGAGATAACAGGT
GAAAATGCATATGAACAATTAAAGCATATATGCGGTCCAGAAAACTTTGATGAAGCAAAA
AATAACTATCCGATTTCATTGCGAGCTCTTTATGGATTTGATGATATTCAATGTGGCGTA
TTGCTCTCTGATGACTATAATATGAATCTACAAGATCTCGAATATTTTTTTCCATCTATG
AATGATAAATTAAAAGTTCAAGCTAAATTTATAAAATCTACTTTGTGCATAATCAAGCCA
CATGCTATAAAAGAAGGAAATATTGGAGCAATTTTAAAAATGATTATTGAAAATGGATTT
TCTATAACAGCCATGAAAATGCTTAATTTGTCTCGTTCAAAATGTGAAACATTTTATGAA
TTATATAAAGGTGTTGTAGATGATTATGCATCAATGGTCCTGCAATTGCAAAGTGGTGCA
TGTTTAGCTATTGAAGTTCAAGGGAATAATGATGACGGTGTGCAAAAAGCATTTCGATCT
TTGTGTGGACCTAGTGATCCATCAATCGCAAAAATTATACGTCCAAATACAATACGAGCT
AATTTTGGAACTGATAAAATTCTCAATGCTGTACACTGCACTGACCTTAGTGAAGATACT
CTTTTGGAAATGGAATATATTTTTAAAGAATTAGATTAA

>g10920.t2 Gene=g10920 Length=331
MKRILLKRTVTELSLNDIYLNATLTIFGKKIIVRQYGNPMTEQKLRTFLMIKPEARQFIG
EIISTLEKRKLYIRNLKMLKLQSLAAVQFLNQRKTPENKVSALMQNLTSGLITVLEITGE
NAYEQLKHICGPENFDEAKNNYPISLRALYGFDDIQCGVLLSDDYNMNLQDLEYFFPSMN
DKLKVQAKFIKSTLCIIKPHAIKEGNIGAILKMIIENGFSITAMKMLNLSRSKCETFYEL
YKGVVDDYASMVLQLQSGACLAIEVQGNNDDGVQKAFRSLCGPSDPSIAKIIRPNTIRAN
FGTDKILNAVHCTDLSEDTLLEMEYIFKELD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g10920.t2 CDD cd04412 NDPk7B 192 327 0e+00
8 g10920.t2 Gene3D G3DSA:3.30.70.141 - 44 180 0e+00
9 g10920.t2 Gene3D G3DSA:3.30.70.141 - 189 331 0e+00
3 g10920.t2 PANTHER PTHR43109 NUCLEOSIDE DIPHOSPHATE KINASE 7 13 330 0e+00
2 g10920.t2 Pfam PF00334 Nucleoside diphosphate kinase 46 178 0e+00
1 g10920.t2 Pfam PF00334 Nucleoside diphosphate kinase 192 329 0e+00
6 g10920.t2 SMART SM00562 ndk_5 44 181 9e-07
7 g10920.t2 SMART SM00562 ndk_5 190 331 0e+00
5 g10920.t2 SUPERFAMILY SSF54919 Nucleoside diphosphate kinase, NDK 46 179 0e+00
4 g10920.t2 SUPERFAMILY SSF54919 Nucleoside diphosphate kinase, NDK 189 330 0e+00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0004550 nucleoside diphosphate kinase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed