General information for g10923.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g10923 is located on chr_1: 12731685..12732633 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10923 | g10923.t2 | TSS | g10923.t2 | 12728977 | 12728977 |
| chr_1 | g10923 | g10923.t2 | isoform | g10923.t2 | 12729026 | 12729608 |
| chr_1 | g10923 | g10923.t2 | exon | g10923.t2.exon1 | 12729026 | 12729608 |
| chr_1 | g10923 | g10923.t2 | cds | g10923.t2.CDS1 | 12729026 | 12729556 |
| chr_1 | g10923 | g10923.t2 | TTS | g10923.t2 | NA | NA |
Sequences
>g10923.t2 Gene=g10923 Length=583
ATGGATTATTTTAGTTTATTGCCAAACGAGATTATCTCAGACCATATATTCATTTATTTA
AAGGCAATTCCTTTCACAGAAAGACCATCGTATTTTCAAAGCGATCTTAAAAATCTTACA
TTGGTTTGCAAAAGATTTAACGAAATAATTGGAACTTCAAAGGAACTAATTTCCAATTTT
GAGCTAATTATATCAACTAAAACATTGGAGAATGGATTATTCAACGCATATTTTGTTCGC
AAGTATCAAAAAATTATAGTAATTGACTCTGACATTAATAAACAAAAAGAACTTTTACAA
GTTTTTGAAAGATATGGAAGAAATCTGGAAATATTGACAATAGTTGGCAATCTTTTATTG
ATTTATGGAAGATCTTTGTTTCTTAATACACCAAAACTTCATACTGTGATTGCATCTTGC
TTTAAAACAATTAAATATAACAATTTAACTCAAAAGTGTCAAATAACAGATTTACCAAAT
TTAAAGAATTTGATATTTACGGGCAATAATAGTTCTTATCCAGTAAGTTAAATTTCAATA
TAAATTAACACTTATTCTAAAAATTTTAAATATATTCAATAGG
>g10923.t2 Gene=g10923 Length=176
MDYFSLLPNEIISDHIFIYLKAIPFTERPSYFQSDLKNLTLVCKRFNEIIGTSKELISNF
ELIISTKTLENGLFNAYFVRKYQKIIVIDSDINKQKELLQVFERYGRNLEILTIVGNLLL
IYGRSLFLNTPKLHTVIASCFKTIKYNNLTQKCQITDLPNLKNLIFTGNNSSYPVS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g10923.t2 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 3 | 175 | 0e+00 |
| 1 | g10923.t2 | Pfam | PF12937 | F-box-like | 5 | 50 | 1e-05 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed