Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Chitotriosidase-1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10923 g10923.t5 TSS g10923.t5 12730685 12730685
chr_1 g10923 g10923.t5 isoform g10923.t5 12730804 12732205
chr_1 g10923 g10923.t5 exon g10923.t5.exon1 12730804 12730846
chr_1 g10923 g10923.t5 cds g10923.t5.CDS1 12730809 12730846
chr_1 g10923 g10923.t5 exon g10923.t5.exon2 12730945 12730988
chr_1 g10923 g10923.t5 cds g10923.t5.CDS2 12730945 12730988
chr_1 g10923 g10923.t5 exon g10923.t5.exon3 12731055 12731141
chr_1 g10923 g10923.t5 cds g10923.t5.CDS3 12731055 12731141
chr_1 g10923 g10923.t5 exon g10923.t5.exon4 12731206 12731627
chr_1 g10923 g10923.t5 cds g10923.t5.CDS4 12731206 12731627
chr_1 g10923 g10923.t5 exon g10923.t5.exon5 12731685 12732045
chr_1 g10923 g10923.t5 cds g10923.t5.CDS5 12731685 12732045
chr_1 g10923 g10923.t5 exon g10923.t5.exon6 12732104 12732205
chr_1 g10923 g10923.t5 cds g10923.t5.CDS6 12732104 12732204
chr_1 g10923 g10923.t5 TTS g10923.t5 NA NA

Sequences

>g10923.t5 Gene=g10923 Length=1059
GGATAATGACAAAACAAAAATATGAACTCATAAGTAATCAGAGGAACACTGGAAGTAGGA
ATTTTCTAGCAATAAGTTTATTAACATTGCTGTGCATATTGCTGTTTTCATGCATATTTA
TATTTTGGGATGAAATTTACAACAAGAGATTGAATATACCTCAAAAATCTAATGACATTC
CACATTTATGGCATAATAGATTAGAATTTTATAATAAAAAATTGCATGCAAGCATTAGTG
ATATTGATAAAAACAATAGTGTAAACGATAATGATAAAATCACAATAAGTAGCTCAAAAT
TCGGAAACTATATTTATTCAAGTGAGCGAGCAAAGTATGATAAAAAATTAATTTGTTATT
ACACAACACCAAAATTCGTGAGCAATGGTCGACAAAGAACAAGAAGAAGTAGCTTAAATG
TCAACGAAAATCTGTTGAAAATTCAAGACATTAATCCCTATTTATGCACGCACTTGAACA
TTGGCATTATAGACATCGAAAATTGTACACTCCAGCTTGATGATGATCTTATTAATGCCT
TTCGTGACGGCAATGAGCTCAAAAAGAAAAATGATCGTCTCAAACTAATGCTTTGGGTTG
GTGGTGGCGATGAATCTTATGGATTTCCAGAAATGATTGCTAATCATTCAAATCGAAAGC
TTTTTATTCAGTCAGTGAAAAAAGCACTCGAGACATATTCACTTGATGGCATTGACATTG
ATTTTGAATTTCCTGATGGAAGTAATTCACAAAGAATTCATTTCATGCAACTTCTTCACG
AAATTCGTCGCGAATACCAACGTGAGCACACAACTTACTTATTATCGATAGCAGTTGCAG
CACCTGCAGTATTTGTCGATATGTGTTATGATGTTCCGATGATTAACGAAAATGTGGATT
ATGTGAACATTATGACATACGATTATCACTTTTATTCCAAAGGAACTCCCTATACAGGTT
TAAACTCGCCGCTTTATGCAAAGTCAAATGAGATCGGTTTTTTTGAAACATTAAACATAA
ATTATTCTGTTAATTACTGGATTTCAAAAGGATTAGATC

>g10923.t5 Gene=g10923 Length=351
MTKQKYELISNQRNTGSRNFLAISLLTLLCILLFSCIFIFWDEIYNKRLNIPQKSNDIPH
LWHNRLEFYNKKLHASISDIDKNNSVNDNDKITISSSKFGNYIYSSERAKYDKKLICYYT
TPKFVSNGRQRTRRSSLNVNENLLKIQDINPYLCTHLNIGIIDIENCTLQLDDDLINAFR
DGNELKKKNDRLKLMLWVGGGDESYGFPEMIANHSNRKLFIQSVKKALETYSLDGIDIDF
EFPDGSNSQRIHFMQLLHEIRREYQREHTTYLLSIAVAAPAVFVDMCYDVPMINENVDYV
NIMTYDYHFYSKGTPYTGLNSPLYAKSNEIGFFETLNINYSVNYWISKGLD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g10923.t5 Coils Coil Coil 350 351 -
5 g10923.t5 Gene3D G3DSA:3.20.20.80 Glycosidases 108 351 2.2E-56
2 g10923.t5 PANTHER PTHR11177 CHITINASE 139 351 1.4E-69
3 g10923.t5 PANTHER PTHR11177:SF324 CHITINASE 11 139 351 1.4E-69
1 g10923.t5 Pfam PF00704 Glycosyl hydrolases family 18 115 350 2.3E-44
7 g10923.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 19 -
9 g10923.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 20 41 -
8 g10923.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 42 351 -
11 g10923.t5 ProSitePatterns PS01095 Chitinases family 18 active site. 233 241 -
12 g10923.t5 SMART SM00636 2g34 113 351 2.6E-11
4 g10923.t5 SUPERFAMILY SSF51445 (Trans)glycosidases 112 350 3.48E-52
10 g10923.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 20 42 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds MF
GO:0008061 chitin binding MF
GO:0005975 carbohydrate metabolic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values