General information for g10923.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Acidic mammalian chitinase.
Parent gene
- The parent gene g10923 is located on chr_1: 12731685..12732633 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10923 | g10923.t7 | TSS | g10923.t7 | 12730685 | 12730685 |
| chr_1 | g10923 | g10923.t7 | isoform | g10923.t7 | 12731685 | 12732633 |
| chr_1 | g10923 | g10923.t7 | exon | g10923.t7.exon1 | 12731685 | 12732045 |
| chr_1 | g10923 | g10923.t7 | cds | g10923.t7.CDS1 | 12731721 | 12732045 |
| chr_1 | g10923 | g10923.t7 | exon | g10923.t7.exon2 | 12732104 | 12732633 |
| chr_1 | g10923 | g10923.t7 | cds | g10923.t7.CDS2 | 12732104 | 12732633 |
| chr_1 | g10923 | g10923.t7 | TTS | g10923.t7 | NA | NA |
Sequences
>g10923.t7 Gene=g10923 Length=891
GTTGGTGGTGGCGATGAATCTTATGGATTTCCAGAAATGATTGCTAATCATTCAAATCGA
AAGCTTTTTATTCAGTCAGTGAAAAAAGCACTCGAGACATATTCACTTGATGGCATTGAC
ATTGATTTTGAATTTCCTGATGGAAGTAATTCACAAAGAATTCATTTCATGCAACTTCTT
CACGAAATTCGTCGCGAATACCAACGTGAGCACACAACTTACTTATTATCGATAGCAGTT
GCAGCACCTGCAGTATTTGTCGATATGTGTTATGATGTTCCGATGATTAACGAAAATGTG
GATTATGTGAACATTATGACATACGATTATCACTTTTATTCCAAAGGAACTCCCTATACA
GGTTTAAACTCGCCGCTTTATGCAAAGTCAAATGAGATCGGTTTTTTTGAAACATTAAAC
ATAAATTATTCTGTTAATTACTGGATTTCAAAAGGATTAGATCGGTCAAAAATTGTAGTC
GGATTAGCAACTTATGCTCACTCATTTCGACTTGTTAATCCATTCAACACCAAAATTTAT
GCACCTGCGGAAGACTTCGGAAGTGTAGGAGTGTTAGGATTTGTGTCATATTCAGAAATT
TGTTGGTTCATAGAGACAAATTTCAATGTGAAAATTGAATATGATGCTGAAACCTGCTCA
CCATTTTTACACACTGGTCTAGAATGGATATCATATGATGATGAGAGATCCATTGAATGC
AAGGCAAATTATATTAAAAACAACGACTTTGGAGGCATTATGGTGTTCTCATTAAATACT
GATGATTTTAAATTTACTTGCTCAGCCAAAAAGTATGCCGGTGGTGAGAAGAAAAACTTT
CCTTTATTGAGAAAGATTCATTCAGTTTTATTTCGAAATTCATCACATTAA
>g10923.t7 Gene=g10923 Length=284
MIANHSNRKLFIQSVKKALETYSLDGIDIDFEFPDGSNSQRIHFMQLLHEIRREYQREHT
TYLLSIAVAAPAVFVDMCYDVPMINENVDYVNIMTYDYHFYSKGTPYTGLNSPLYAKSNE
IGFFETLNINYSVNYWISKGLDRSKIVVGLATYAHSFRLVNPFNTKIYAPAEDFGSVGVL
GFVSYSEICWFIETNFNVKIEYDAETCSPFLHTGLEWISYDDERSIECKANYIKNNDFGG
IMVFSLNTDDFKFTCSAKKYAGGEKKNFPLLRKIHSVLFRNSSH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g10923.t7 | Gene3D | G3DSA:3.10.50.10 | - | 156 | 220 | 1.1E-12 |
| 2 | g10923.t7 | PANTHER | PTHR11177 | CHITINASE | 1 | 280 | 2.3E-109 |
| 3 | g10923.t7 | PANTHER | PTHR11177:SF324 | CHITINASE 11 | 1 | 280 | 2.3E-109 |
| 1 | g10923.t7 | Pfam | PF00704 | Glycosyl hydrolases family 18 | 2 | 249 | 2.6E-54 |
| 7 | g10923.t7 | ProSitePatterns | PS01095 | Chitinases family 18 active site. | 24 | 32 | - |
| 6 | g10923.t7 | SMART | SM00636 | 2g34 | 1 | 249 | 7.4E-36 |
| 5 | g10923.t7 | SUPERFAMILY | SSF51445 | (Trans)glycosidases | 1 | 257 | 1.79E-57 |
| 4 | g10923.t7 | SUPERFAMILY | SSF54556 | Chitinase insertion domain | 153 | 220 | 6.11E-11 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | MF |
| GO:0008061 | chitin binding | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
