General information for g10929.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g10929 is located on chr_1: 12829172..12829980 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10929 | g10929.t6 | isoform | g10929.t6 | 12822878 | 12827263 |
| chr_1 | g10929 | g10929.t6 | exon | g10929.t6.exon1 | 12822878 | 12823067 |
| chr_1 | g10929 | g10929.t6 | TSS | g10929.t6 | 12822881 | 12822881 |
| chr_1 | g10929 | g10929.t6 | exon | g10929.t6.exon2 | 12824318 | 12824915 |
| chr_1 | g10929 | g10929.t6 | cds | g10929.t6.CDS1 | 12824525 | 12824915 |
| chr_1 | g10929 | g10929.t6 | exon | g10929.t6.exon3 | 12827081 | 12827263 |
| chr_1 | g10929 | g10929.t6 | cds | g10929.t6.CDS2 | 12827081 | 12827262 |
| chr_1 | g10929 | g10929.t6 | TTS | g10929.t6 | NA | NA |
Sequences
>g10929.t6 Gene=g10929 Length=971
TTTCAGTTGAATTTTCAAGACGGAACTAAACGGTTGAAGTTTTATTTATTCTTATTTATC
GGAATTTTTAGTGTTTGTTTGTCTAAATATTCTAAAAAAAAAAATGATAAAAAATCATGA
ATTTAATTAGAAAGTTTTTGCTGACTAGTGAATTTTTGTAATATTTCTATAGTTTTTTTT
TCAAAAAAAACATTCAACCTGAGGCAATATCATATCGCGGTTCATAAGTAATAAAAAAAG
TCATATTATACATTGCAAACTCGCTGTTGTTAAACTTTTTTTTGGACAATCCAATGATTG
AGGATAATAAAAATTAATTGCTACACGAGAAAAAAAGAAATATACAACAAGTGAAGAAGA
AAAAACAAATTGTGAAAAACAGAAAAAAACGTGCGAGATGGCTTCATTGTATGTAAAATA
TCCAAAAACCTGCCGCAATAAAAAGTCTAGTGTCTATCTGACACCACCTGTCTCATCGAT
CTCATCATCTTCATCAGGCTCATTGTCGAGCGCTGATGGTATTAAGCCAGCTTCATTAAT
CAATTCTCAAAAATCATCAAAACGTAAACAACATTATTATCCTCACCATCATCATATGAG
AAGTCACAAGGTCTCGACAATGCCAAAACGTCGAAAATTAAAGCTTAAAAAATCATCAGC
TTCATCGTCTGCTGCAGCGACAAGCAGTGACAGCGACACAAACAAACTCAATGAATGCCG
GTCGTTCATCAACAATAATGCTCAAGAAGAAATCAACCGAAATAATTGTGACTGTGACTT
TCAAACATTACCAGCAATTGGAGTCGATGTAGGTGGGACGTTAACCAAATTAGTTTATTT
TGAACCAAATGACGAAGAAGAATATGGTGGAGAATTGGAAGCAAAAGTACTCAAAAACAT
TCGTAGATATTTGACGAAAAATTCAGCTTATGGAAATACAGGTCATCGCGATATACATTT
ACAGGTTTGTA
>g10929.t6 Gene=g10929 Length=191
MASLYVKYPKTCRNKKSSVYLTPPVSSISSSSSGSLSSADGIKPASLINSQKSSKRKQHY
YPHHHHMRSHKVSTMPKRRKLKLKKSSASSSAAATSSDSDTNKLNECRSFINNNAQEEIN
RNNCDCDFQTLPAIGVDVGGTLTKLVYFEPNDEEEYGGELEAKVLKNIRRYLTKNSAYGN
TGHRDIHLQVC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g10929.t6 | Gene3D | G3DSA:3.30.420.510 | - | 126 | 191 | 1.3E-18 |
| 5 | g10929.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 98 | - |
| 4 | g10929.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 85 | - |
| 1 | g10929.t6 | PANTHER | PTHR12280:SF23 | PANTOTHENATE KINASE 1 | 89 | 189 | 1.3E-17 |
| 2 | g10929.t6 | PANTHER | PTHR12280 | PANTOTHENATE KINASE | 89 | 189 | 1.3E-17 |
| 3 | g10929.t6 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 132 | 190 | 2.43E-11 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
