General information for g10936.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Anaphase-promoting complex subunit 5.
Parent gene
- The parent gene g10936 is located on chr_1: 12862706..12865200 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10936 | g10936.t3 | TSS | g10936.t3 | 12862580 | 12862580 |
| chr_1 | g10936 | g10936.t3 | isoform | g10936.t3 | 12862706 | 12865200 |
| chr_1 | g10936 | g10936.t3 | exon | g10936.t3.exon1 | 12862706 | 12865012 |
| chr_1 | g10936 | g10936.t3 | cds | g10936.t3.CDS1 | 12862706 | 12864979 |
| chr_1 | g10936 | g10936.t3 | exon | g10936.t3.exon2 | 12865083 | 12865200 |
| chr_1 | g10936 | g10936.t3 | TTS | g10936.t3 | NA | NA |
Sequences
>g10936.t3 Gene=g10936 Length=2425
ATGAATCCAAAAGAAACTGAAGTAAACTTCTTTTTGCCGCTACCACCGTCAAATAAAAAC
TTGGATATTTCGCCATACAAAATTTTTGTTGTGATTTTGTTGAAAGAATATTTAAGGAAA
AAGTCAGACGATGAAGAATTAGATGAGACAAGTGATGAAAAACATCTTGTACCATCATCA
AGTTATCCTGCTGCATATCGACGGCAATTTTATATGACGCTATTAAAACTCTCACAAATA
TCAGATATGAGTTTCAAAGATTTGTATTTCTTTCTATCGAGCGGGAAATATAAGGTAATG
GATAGTCATTTGAAAGGATTTGATACCACAATTAGTCTATTAAACAAACTTGGAATCGAA
ATTTTATTCAAATTATCAAAAACGATGGATTTATTGATAACAGACACACAAACAAGAAAC
AATAGTCCAATCATACATCAATCAAGTGTCGTAGGTCTTTATTTTCGTCGCATTTTAGTC
TATTTGGATAAAATGTCCTTTCAAGAGCTTATGGATCTACAACGAAATATAATTACGTAC
TATGAAAAAGGAATGCGAGCTCTTGCATTTTCAAATTTGCAGACACCACTCGATATCACA
GATGAAGTTTCTTTAATGAAAAGTAAATGGTCTTCGAAGCAAGCAGAAATTTTCATAGCT
CAACAAAGTTCATTACTTGAGAACGATGAAAGTAAAGCATTGAAACCTAAAGAATTGCAG
AAAAAAATTGAAGAAATAGTTCAAACATTCAATCCGCTTTACTCGAAAGCTTATTTCTTA
TCATATTTGAATAATGTTAGAATTCGAGATCTTCCAAATTGCATAGAAGCGCTACATCGC
TCTTTTGACAGAAATATTGCCAAAACTGCAACGGATGATAGTCAAAATCAGACTAATAAA
TCTCATTTTCAGTACTCATTGCTTAATCTTGCAATATTGCATACAATGTTTGAACAAAAT
GAAGAAGCGTTAAAGTGCCTTAAGGAGTGTATTATGACAGCACAAGAGAGTGGCGATAGA
GTTTGTTTGCAACTTGCTCAACTTTGGCTGTGTCTTTTGGACAAGAAAAATTTTCAACTC
TCTGAAAAGAATATTGCAAACAAGACTGAGAAAACGCTCGTTCGTTCAGTATCACTCAAT
ATTCAATCATTAGTCAAAGTTGCAGCACTCTCTGGATATTTACCATCCAAACTCTTTGAC
GTACTTATTAAAAGTGATATGCTCAATTGTCAACACTCAATAGTGAATTTAATCTCTAAT
TGTATTGCTGAAAGAGCTGCTCTGTGGACATTATATGGAAAACATGAAATGGCCTCTCTT
TGCAGTCAACTTTTACTCAATTCAAATCTAAAAATTATGGATAAAACATATAATGGTGAG
GGATTGTGTCAAGCTATGTGCAATGTAGCTATGTGGCATGCTTATCAAGGAGATTTCGCG
GTATCTGGAATCATATTACAACAGCTTAAATTGAAATTTCCACGATATCCAGTTTCGAAA
AATTGGTTTTTGGTCGATAATTTCATTACAAGTTTTCATGCAATTTACAATGAAAGATGG
AGTGATGCAGCGAAAGCATGTGACAACATTTACCATATTGATAAAAATCTCAGTATTCTT
CAACGTGCAAATATAAATATAGCAAGAGGAAATTTGTATGATGCACTAAGCTTTGTTGAT
ATTTTGTTGGATGAAAAAAATGAGAATCTAGAATCATACTATAGAGCTCGAGCAATGGTA
ATACAAGCAATGTGCATAATTGATGCAATTGAGGAAAACGGCAGTAAAGTGTCATCAAAA
TCTCAATCTCTCTTAATACTTAATCGTGCTTCAGTATTTGCACGTGAAAAGTATTTGGAT
TATGAACATTCTATCATCAGTATGCATATAGGATTCGTTTTTCTTAGCATGAATATGCCA
AATGAGGCTCTCAAAGCAGTAAAATTGAAAATGGAAGATATTCTAGCAAACGGAGGCATT
TATGACAAGGGTAAAGTTCTCTTTCTCTTCAATCAATGTTTGATTGCTGCAACAAATGCG
AAAGATAAGAAGATTGAAAAATTGAAACTTCTCAAAGACCAATTCGATTTGGCTATCAGT
TATTTCACGAAACTCGAGTGCTGGCGAAAAGTGAAAGCAATTTATGTGTATTTGGCAAAA
TTATGCAACGAATTAGGAATGACAGATGAACGTAATCATTACTCATATAAATTTCGTCTT
CTTGCTGAAGAACATGTAAACAGCTCAAACGAGAATATCAATATTTTTTATTAGTTTCTT
CTGCATTCTGAAAGAAAAACATTCAAAATGATATATAAATTGAAATTCAATGGTCCATAT
GAGCTCAAAAATTAAATTTTACTTATTGTTATCATATTTTTACTAACATTAAGTTTTTTG
TAATAAAATGTTTATTAAAATAAAA
>g10936.t3 Gene=g10936 Length=757
MNPKETEVNFFLPLPPSNKNLDISPYKIFVVILLKEYLRKKSDDEELDETSDEKHLVPSS
SYPAAYRRQFYMTLLKLSQISDMSFKDLYFFLSSGKYKVMDSHLKGFDTTISLLNKLGIE
ILFKLSKTMDLLITDTQTRNNSPIIHQSSVVGLYFRRILVYLDKMSFQELMDLQRNIITY
YEKGMRALAFSNLQTPLDITDEVSLMKSKWSSKQAEIFIAQQSSLLENDESKALKPKELQ
KKIEEIVQTFNPLYSKAYFLSYLNNVRIRDLPNCIEALHRSFDRNIAKTATDDSQNQTNK
SHFQYSLLNLAILHTMFEQNEEALKCLKECIMTAQESGDRVCLQLAQLWLCLLDKKNFQL
SEKNIANKTEKTLVRSVSLNIQSLVKVAALSGYLPSKLFDVLIKSDMLNCQHSIVNLISN
CIAERAALWTLYGKHEMASLCSQLLLNSNLKIMDKTYNGEGLCQAMCNVAMWHAYQGDFA
VSGIILQQLKLKFPRYPVSKNWFLVDNFITSFHAIYNERWSDAAKACDNIYHIDKNLSIL
QRANINIARGNLYDALSFVDILLDEKNENLESYYRARAMVIQAMCIIDAIEENGSKVSSK
SQSLLILNRASVFAREKYLDYEHSIISMHIGFVFLSMNMPNEALKAVKLKMEDILANGGI
YDKGKVLFLFNQCLIAATNAKDKKIEKLKLLKDQFDLAISYFTKLECWRKVKAIYVYLAK
LCNELGMTDERNHYSYKFRLLAEEHVNSSNENINIFY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g10936.t3 | CDD | cd16270 | Apc5_N | 25 | 184 | 0 |
| 2 | g10936.t3 | PANTHER | PTHR12830 | ANAPHASE-PROMOTING COMPLEX SUBUNIT 5 | 22 | 751 | 0 |
| 3 | g10936.t3 | PANTHER | PTHR12830:SF9 | ANAPHASE-PROMOTING COMPLEX SUBUNIT 5 | 22 | 751 | 0 |
| 1 | g10936.t3 | Pfam | PF12862 | Anaphase-promoting complex subunit 5 | 258 | 356 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005680 | anaphase-promoting complex | CC |
KEGG
Orthology
- This transcript has been annotated with K03352 (anaphase-promoting complex subunit 5)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
