General information for g10937.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Proton-coupled amino acid transporter 4.
Parent gene
- The parent gene g10937 is located on chr_1: 12866313..12867461 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10937 | g10937.t10 | TTS | g10937.t10 | 12865629 | 12865629 |
| chr_1 | g10937 | g10937.t10 | isoform | g10937.t10 | 12866313 | 12867257 |
| chr_1 | g10937 | g10937.t10 | exon | g10937.t10.exon1 | 12866313 | 12866548 |
| chr_1 | g10937 | g10937.t10 | cds | g10937.t10.CDS1 | 12866313 | 12866548 |
| chr_1 | g10937 | g10937.t10 | exon | g10937.t10.exon2 | 12866621 | 12867046 |
| chr_1 | g10937 | g10937.t10 | cds | g10937.t10.CDS2 | 12866621 | 12867046 |
| chr_1 | g10937 | g10937.t10 | exon | g10937.t10.exon3 | 12867107 | 12867257 |
| chr_1 | g10937 | g10937.t10 | cds | g10937.t10.CDS3 | 12867107 | 12867257 |
| chr_1 | g10937 | g10937.t10 | TSS | g10937.t10 | 12867360 | 12867360 |
Sequences
>g10937.t10 Gene=g10937 Length=813
ATGGTGGAAAATCATGAAATAGAATTATCATCAGCAAATAAAAATAAAGAAAATAATAAT
TCAGTGAAACAACCTCATTATGAAAGTCACAAAAAACAATTGCCAATTTCTTATCTGGAA
ACGCTCGCGAATTTATTCAAAGCAAATGTCGGCACTGGTTGCTTCGGTATGGCTGATGCT
ATTAAAAATGCAGGAATAATTCTCGGACCAATTGCAACAATTTTTATCGCAATAATTTGT
GTCGAGTGCATGAGAATGTTGCTTAATGCAGCGGACTATATCACAGAAAAAAATCAACTA
ATTACTCGACCAGATTACTCACATGTTGTTGAATTGAGCTTCCTAATTAGTAAACACGAA
CGATGGAGAAAATATTCGAAATTCATGCGAATGCTGTGCAATGTTTCTCTTTGTCTCACA
CAATTTGGTTTTTGCTGTGTGTATTTTTTATTTGTATCGAAAAGCACCAAAACAATTCTT
GATTACTATGGATTTATTTTTGAACTCGAGATTGTTATGCTCTTCGTTTTTATTCCAATT
TTATTGTCCGCTTTAGTTAGGCAGTTAAAATATTTAGTTGCAAATGTATGCATGATCACA
GGTGTTTCAATGACACTTTATTACTGTTTTATTGATTTACCACCAATAACTGAACACAAT
TTTGTAAGATTTGATACATTGCCACTCTATTTTGGGACAGCATTATTTGCATTTGAAGGA
ATCACACTCGTTTTACCACTTCATAATGTGATGAAAAAACCTGAAAATTTTTCAAAATTT
CCATTTGGTGTGTTGCATGTTGGAATGTCACTT
>g10937.t10 Gene=g10937 Length=271
MVENHEIELSSANKNKENNNSVKQPHYESHKKQLPISYLETLANLFKANVGTGCFGMADA
IKNAGIILGPIATIFIAIICVECMRMLLNAADYITEKNQLITRPDYSHVVELSFLISKHE
RWRKYSKFMRMLCNVSLCLTQFGFCCVYFLFVSKSTKTILDYYGFIFELEIVMLFVFIPI
LLSALVRQLKYLVANVCMITGVSMTLYYCFIDLPPITEHNFVRFDTLPLYFGTALFAFEG
ITLVLPLHNVMKKPENFSKFPFGVLHVGMSL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g10937.t10 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - |
| 2 | g10937.t10 | PANTHER | PTHR22950 | AMINO ACID TRANSPORTER | 16 | 270 | 8.6E-55 |
| 3 | g10937.t10 | PANTHER | PTHR22950:SF150 | FI17861P1 | 16 | 270 | 8.6E-55 |
| 1 | g10937.t10 | Pfam | PF01490 | Transmembrane amino acid transporter protein | 36 | 266 | 1.0E-30 |
| 15 | g10937.t10 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 65 | - |
| 17 | g10937.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 66 | 88 | - |
| 12 | g10937.t10 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 89 | 130 | - |
| 19 | g10937.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 131 | 151 | - |
| 14 | g10937.t10 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 152 | 162 | - |
| 20 | g10937.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 163 | 185 | - |
| 11 | g10937.t10 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 186 | 191 | - |
| 16 | g10937.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 192 | 210 | - |
| 13 | g10937.t10 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 211 | 229 | - |
| 18 | g10937.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 230 | 250 | - |
| 10 | g10937.t10 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 251 | 271 | - |
| 5 | g10937.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 66 | 88 | - |
| 4 | g10937.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 131 | 153 | - |
| 8 | g10937.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 163 | 185 | - |
| 7 | g10937.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 192 | 214 | - |
| 6 | g10937.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 229 | 251 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
