General information for g10937.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Proton-coupled amino acid transporter-like protein CG1139.
Parent gene
- The parent gene g10937 is located on chr_1: 12866313..12867461 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10937 | g10937.t3 | isoform | g10937.t3 | 12865081 | 12867461 |
| chr_1 | g10937 | g10937.t3 | exon | g10937.t3.exon1 | 12865081 | 12866194 |
| chr_1 | g10937 | g10937.t3 | TTS | g10937.t3 | 12865116 | 12865116 |
| chr_1 | g10937 | g10937.t3 | cds | g10937.t3.CDS1 | 12865743 | 12866194 |
| chr_1 | g10937 | g10937.t3 | exon | g10937.t3.exon2 | 12866249 | 12866563 |
| chr_1 | g10937 | g10937.t3 | cds | g10937.t3.CDS2 | 12866249 | 12866563 |
| chr_1 | g10937 | g10937.t3 | exon | g10937.t3.exon3 | 12866621 | 12867046 |
| chr_1 | g10937 | g10937.t3 | cds | g10937.t3.CDS3 | 12866621 | 12867046 |
| chr_1 | g10937 | g10937.t3 | exon | g10937.t3.exon4 | 12867107 | 12867347 |
| chr_1 | g10937 | g10937.t3 | cds | g10937.t3.CDS4 | 12867107 | 12867257 |
| chr_1 | g10937 | g10937.t3 | exon | g10937.t3.exon5 | 12867438 | 12867461 |
| chr_1 | g10937 | g10937.t3 | TSS | g10937.t3 | NA | NA |
Sequences
>g10937.t3 Gene=g10937 Length=2120
ACGATATATTTTTTTAAAAAACATCTGCGCGTCAAGTAAGAAAAAAACTTTCCATCATTC
ACATTTTAGTAGACTTATTTTTGGCAGAAGCAAACACAGTCTCTAAATATAAGCATGGTG
GAAAATCATGAAATAGAATTATCATCAGCAAATAAAAATAAAGAAAATAATAATTCAGTG
AAACAACCTCATTATGAAAGTCACAAAAAACAATTGCCAATTTCTTATCTGGAAACGCTC
GCGAATTTATTCAAAGCAAATGTCGGCACTGGTTGCTTCGGTATGGCTGATGCTATTAAA
AATGCAGGAATAATTCTCGGACCAATTGCAACAATTTTTATCGCAATAATTTGTGTCGAG
TGCATGAGAATGTTGCTTAATGCAGCGGACTATATCACAGAAAAAAATCAACTAATTACT
CGACCAGATTACTCACATGTTGTTGAATTGAGCTTCCTAATTAGTAAACACGAACGATGG
AGAAAATATTCGAAATTCATGCGAATGCTGTGCAATGTTTCTCTTTGTCTCACACAATTT
GGTTTTTGCTGTGTGTATTTTTTATTTGTATCGAAAAGCACCAAAACAATTCTTGATTAC
TATGGATTTATTTTTGAACTCGAGATTGTTATGCTCTTCGTTTTTATTCCAATTTTATTG
TCCGCTTTAGTTAGGCAGTTAAAATATTTAGCAATTTTCTCTGCAGTTGCAAATGTATGC
ATGATCACAGGTGTTTCAATGACACTTTATTACTGTTTTATTGATTTACCACCAATAACT
GAACACAATTTTGTAAGATTTGATACATTGCCACTCTATTTTGGGACAGCATTATTTGCA
TTTGAAGGAATCACACTCGTTTTACCACTTCATAATGTGATGAAAAAACCTGAAAATTTT
TCAAAATTTCCATTTGGTGTGTTGCATGTTGGAATGTCACTTGTGAGTTTCATTTATGTC
CTACTTGGATTTATGGGATATTGGAAATTTGGAGAACAAACTGAAGGATCAATAACTCTC
AATCTTCCAACTAATGAAATTCTTGCACAAGTTATAATTGTCATGGCATCCTTTGGTGTT
TTATTTTCATATGCACTTCAATTTTTTGTTGGAATTCATATAATTCTGCCACCAATTTTT
CGAAATTCAAAGACTGCAGCAAAATTTCCAATTTATACTGAACAAATTTTTAGAACATTG
ATGGTTTTCGTGACTTTTATAATTGCCATGCTCGTTCCTGATTTAAGTTTATTATTAAGT
TTGATAGGCTCAGTTTGTTGTGTGATATTGGCGTTTGTATTTCCATCAATTGTTGAACTT
ATGACAAGATATGATGAAGGAAAAATTGGAACATTTTATTGGATTAAAAATATAATTATT
TTGACCATTGCCTTATGTGGATTTATATTAGGTGGCGGCCTCGCATTGATTAATATTTAT
GAAGAATTCATAGCATAAGTTTTTAAAAACTCTGAAGTTGAAGTTGAAGTATTGAAAGAA
GAATTTTTTTCCATCATCATTGTACTTAAATGTTGAAAAATAATTGATACTTAGTTTTTT
AAAATGTCAAAAAATATTTAGTTGTTTGCAAGAAATTTGTTTCAATATTTTATAAATTTT
TTTAAAAATCATTTTTCATGTCACGCACAACATTTACACAAAAAAATACGCGAAATTGCG
TAAGTGTTCGTCCTCCTGATTTCATAACTGAAAAAATTAAAATTTTTATACGTTATTTTT
TATTTTAAATTTAAAATATATTTTAAGATTATCGTGACAGTTATAGAAAATTAAGAGATG
ACAAATGAGCTTAATCCATCATCTACAAATAATAAAAGAAACAAATATTACCATTGATAG
TGCACGAAGAAATTTTTGAAAAATATATAATTGTCAGTTTCGTATCTTTCGTTTTCTTTT
TTTTCTATTGCAATAGTTTGTGTTGAATGCATGATAATGTTGCCTGAAATGAAATTGGAT
TTGTGAAAAAATTGAATTTATTTTATTTTAATAAACATTTTATTACAAAAAACTTAATGT
TAGTAAAAATATGATAACAATAAGTAAAATTTAATTTTTGAGCTCATATGGACCATTGAA
TTTCAATTTATATATCATCT
>g10937.t3 Gene=g10937 Length=447
MVENHEIELSSANKNKENNNSVKQPHYESHKKQLPISYLETLANLFKANVGTGCFGMADA
IKNAGIILGPIATIFIAIICVECMRMLLNAADYITEKNQLITRPDYSHVVELSFLISKHE
RWRKYSKFMRMLCNVSLCLTQFGFCCVYFLFVSKSTKTILDYYGFIFELEIVMLFVFIPI
LLSALVRQLKYLAIFSAVANVCMITGVSMTLYYCFIDLPPITEHNFVRFDTLPLYFGTAL
FAFEGITLVLPLHNVMKKPENFSKFPFGVLHVGMSLVSFIYVLLGFMGYWKFGEQTEGSI
TLNLPTNEILAQVIIVMASFGVLFSYALQFFVGIHIILPPIFRNSKTAAKFPIYTEQIFR
TLMVFVTFIIAMLVPDLSLLLSLIGSVCCVILAFVFPSIVELMTRYDEGKIGTFYWIKNI
IILTIALCGFILGGGLALINIYEEFIA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g10937.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - |
| 2 | g10937.t3 | PANTHER | PTHR22950:SF340 | GLUTAMATE TRANSPORTER POLYPHEMUS-RELATED | 8 | 445 | 8.7E-106 |
| 3 | g10937.t3 | PANTHER | PTHR22950 | AMINO ACID TRANSPORTER | 8 | 445 | 8.7E-106 |
| 1 | g10937.t3 | Pfam | PF01490 | Transmembrane amino acid transporter protein | 36 | 432 | 4.5E-66 |
| 21 | g10937.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 65 | - |
| 32 | g10937.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 66 | 88 | - |
| 16 | g10937.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 89 | 130 | - |
| 29 | g10937.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 131 | 151 | - |
| 20 | g10937.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 152 | 162 | - |
| 35 | g10937.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 163 | 185 | - |
| 15 | g10937.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 186 | 191 | - |
| 33 | g10937.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 192 | 213 | - |
| 24 | g10937.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 214 | 232 | - |
| 34 | g10937.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 233 | 253 | - |
| 18 | g10937.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 254 | 264 | - |
| 30 | g10937.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 265 | 289 | - |
| 25 | g10937.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 290 | 308 | - |
| 31 | g10937.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 309 | 338 | - |
| 17 | g10937.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 339 | 357 | - |
| 28 | g10937.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 358 | 374 | - |
| 23 | g10937.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 375 | 379 | - |
| 27 | g10937.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 380 | 400 | - |
| 19 | g10937.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 401 | 419 | - |
| 26 | g10937.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 420 | 442 | - |
| 22 | g10937.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 443 | 447 | - |
| 6 | g10937.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 66 | 88 | - |
| 7 | g10937.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 131 | 153 | - |
| 12 | g10937.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 163 | 185 | - |
| 10 | g10937.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 192 | 214 | - |
| 11 | g10937.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 234 | 256 | - |
| 13 | g10937.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 268 | 290 | - |
| 8 | g10937.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 310 | 332 | - |
| 5 | g10937.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 352 | 374 | - |
| 9 | g10937.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 378 | 400 | - |
| 4 | g10937.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 420 | 442 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K14209 (solute carrier family 36 (proton-coupled amino acid transporter))
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
