General information for g10937.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Proton-coupled amino acid transporter 4.
Parent gene
- The parent gene g10937 is located on chr_1: 12866313..12867461 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10937 | g10937.t4 | isoform | g10937.t4 | 12865081 | 12867461 |
| chr_1 | g10937 | g10937.t4 | exon | g10937.t4.exon1 | 12865081 | 12866194 |
| chr_1 | g10937 | g10937.t4 | TTS | g10937.t4 | 12865116 | 12865116 |
| chr_1 | g10937 | g10937.t4 | cds | g10937.t4.CDS1 | 12866186 | 12866194 |
| chr_1 | g10937 | g10937.t4 | exon | g10937.t4.exon2 | 12866313 | 12866563 |
| chr_1 | g10937 | g10937.t4 | cds | g10937.t4.CDS2 | 12866313 | 12866563 |
| chr_1 | g10937 | g10937.t4 | exon | g10937.t4.exon3 | 12866621 | 12867046 |
| chr_1 | g10937 | g10937.t4 | cds | g10937.t4.CDS3 | 12866621 | 12867046 |
| chr_1 | g10937 | g10937.t4 | exon | g10937.t4.exon4 | 12867107 | 12867347 |
| chr_1 | g10937 | g10937.t4 | cds | g10937.t4.CDS4 | 12867107 | 12867257 |
| chr_1 | g10937 | g10937.t4 | exon | g10937.t4.exon5 | 12867438 | 12867461 |
| chr_1 | g10937 | g10937.t4 | TSS | g10937.t4 | NA | NA |
Sequences
>g10937.t4 Gene=g10937 Length=2056
ACGATATATTTTTTTAAAAAACATCTGCGCGTCAAGTAAGAAAAAAACTTTCCATCATTC
ACATTTTAGTAGACTTATTTTTGGCAGAAGCAAACACAGTCTCTAAATATAAGCATGGTG
GAAAATCATGAAATAGAATTATCATCAGCAAATAAAAATAAAGAAAATAATAATTCAGTG
AAACAACCTCATTATGAAAGTCACAAAAAACAATTGCCAATTTCTTATCTGGAAACGCTC
GCGAATTTATTCAAAGCAAATGTCGGCACTGGTTGCTTCGGTATGGCTGATGCTATTAAA
AATGCAGGAATAATTCTCGGACCAATTGCAACAATTTTTATCGCAATAATTTGTGTCGAG
TGCATGAGAATGTTGCTTAATGCAGCGGACTATATCACAGAAAAAAATCAACTAATTACT
CGACCAGATTACTCACATGTTGTTGAATTGAGCTTCCTAATTAGTAAACACGAACGATGG
AGAAAATATTCGAAATTCATGCGAATGCTGTGCAATGTTTCTCTTTGTCTCACACAATTT
GGTTTTTGCTGTGTGTATTTTTTATTTGTATCGAAAAGCACCAAAACAATTCTTGATTAC
TATGGATTTATTTTTGAACTCGAGATTGTTATGCTCTTCGTTTTTATTCCAATTTTATTG
TCCGCTTTAGTTAGGCAGTTAAAATATTTAGCAATTTTCTCTGCAGTTGCAAATGTATGC
ATGATCACAGGTGTTTCAATGACACTTTATTACTGTTTTATTGATTTACCACCAATAACT
GAACACAATTTTGTAAGATTTGATACATTGCCACTCTATTTTGGGACAGCATTATTTGCA
TTTGAAGGAATCACACTCGTTTTACCACTTCATAATGTGATGAAAAAACCTGAAAATTTT
TCAAAATTTCCATTTGGTGTGTTGCATGTTGGAATGTCACTTGATCAATAACTCTCAATC
TTCCAACTAATGAAATTCTTGCACAAGTTATAATTGTCATGGCATCCTTTGGTGTTTTAT
TTTCATATGCACTTCAATTTTTTGTTGGAATTCATATAATTCTGCCACCAATTTTTCGAA
ATTCAAAGACTGCAGCAAAATTTCCAATTTATACTGAACAAATTTTTAGAACATTGATGG
TTTTCGTGACTTTTATAATTGCCATGCTCGTTCCTGATTTAAGTTTATTATTAAGTTTGA
TAGGCTCAGTTTGTTGTGTGATATTGGCGTTTGTATTTCCATCAATTGTTGAACTTATGA
CAAGATATGATGAAGGAAAAATTGGAACATTTTATTGGATTAAAAATATAATTATTTTGA
CCATTGCCTTATGTGGATTTATATTAGGTGGCGGCCTCGCATTGATTAATATTTATGAAG
AATTCATAGCATAAGTTTTTAAAAACTCTGAAGTTGAAGTTGAAGTATTGAAAGAAGAAT
TTTTTTCCATCATCATTGTACTTAAATGTTGAAAAATAATTGATACTTAGTTTTTTAAAA
TGTCAAAAAATATTTAGTTGTTTGCAAGAAATTTGTTTCAATATTTTATAAATTTTTTTA
AAAATCATTTTTCATGTCACGCACAACATTTACACAAAAAAATACGCGAAATTGCGTAAG
TGTTCGTCCTCCTGATTTCATAACTGAAAAAATTAAAATTTTTATACGTTATTTTTTATT
TTAAATTTAAAATATATTTTAAGATTATCGTGACAGTTATAGAAAATTAAGAGATGACAA
ATGAGCTTAATCCATCATCTACAAATAATAAAAGAAACAAATATTACCATTGATAGTGCA
CGAAGAAATTTTTGAAAAATATATAATTGTCAGTTTCGTATCTTTCGTTTTCTTTTTTTT
CTATTGCAATAGTTTGTGTTGAATGCATGATAATGTTGCCTGAAATGAAATTGGATTTGT
GAAAAAATTGAATTTATTTTATTTTAATAAACATTTTATTACAAAAAACTTAATGTTAGT
AAAAATATGATAACAATAAGTAAAATTTAATTTTTGAGCTCATATGGACCATTGAATTTC
AATTTATATATCATCT
>g10937.t4 Gene=g10937 Length=278
MVENHEIELSSANKNKENNNSVKQPHYESHKKQLPISYLETLANLFKANVGTGCFGMADA
IKNAGIILGPIATIFIAIICVECMRMLLNAADYITEKNQLITRPDYSHVVELSFLISKHE
RWRKYSKFMRMLCNVSLCLTQFGFCCVYFLFVSKSTKTILDYYGFIFELEIVMLFVFIPI
LLSALVRQLKYLAIFSAVANVCMITGVSMTLYYCFIDLPPITEHNFVRFDTLPLYFGTAL
FAFEGITLVLPLHNVMKKPENFSKFPFGVLHVGMSLDQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g10937.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - |
| 2 | g10937.t4 | PANTHER | PTHR22950 | AMINO ACID TRANSPORTER | 16 | 275 | 9.7E-59 |
| 3 | g10937.t4 | PANTHER | PTHR22950:SF150 | FI17861P1 | 16 | 275 | 9.7E-59 |
| 1 | g10937.t4 | Pfam | PF01490 | Transmembrane amino acid transporter protein | 36 | 271 | 8.1E-36 |
| 14 | g10937.t4 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 65 | - |
| 16 | g10937.t4 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 66 | 88 | - |
| 11 | g10937.t4 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 89 | 130 | - |
| 19 | g10937.t4 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 131 | 151 | - |
| 13 | g10937.t4 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 152 | 162 | - |
| 20 | g10937.t4 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 163 | 185 | - |
| 10 | g10937.t4 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 186 | 191 | - |
| 17 | g10937.t4 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 192 | 213 | - |
| 15 | g10937.t4 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 214 | 232 | - |
| 18 | g10937.t4 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 233 | 252 | - |
| 12 | g10937.t4 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 253 | 278 | - |
| 5 | g10937.t4 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 66 | 88 | - |
| 4 | g10937.t4 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 131 | 153 | - |
| 8 | g10937.t4 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 163 | 185 | - |
| 7 | g10937.t4 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 192 | 214 | - |
| 6 | g10937.t4 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 234 | 256 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed